Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035089.1-P | Field mustard | cytosol | 79.71 | 79.71 |
| CDX87410 | Canola | cytosol | 79.71 | 79.71 |
| CDX88503 | Canola | nucleus | 78.26 | 78.26 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 47.1 | 47.79 |
| GSMUA_Achr11P... | Banana | cytosol | 44.2 | 43.26 |
| Solyc07g066370.2.1 | Tomato | cytosol | 44.2 | 40.94 |
| KRH13655 | Soybean | nucleus | 45.65 | 40.65 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 40.58 | 38.89 |
| PGSC0003DMT400056908 | Potato | nucleus | 42.03 | 37.91 |
| KRH43808 | Soybean | nucleus | 47.1 | 34.76 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 39.13 | 34.39 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 39.13 | 34.39 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 37.68 | 33.12 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 36.23 | 30.3 |
| KXG24345 | Sorghum | nucleus | 36.23 | 25.91 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 31.88 | 25.88 |
Protein Annotations
| MapMan:35.2 | EntrezGene:844248 | ProteinID:AEE36200.1 | EMBL:AK118221 | ProteinID:ANM57901.1 | ArrayExpress:AT1G79070 |
| EnsemblPlantsGene:AT1G79070 | RefSeq:AT1G79070 | TAIR:AT1G79070 | RefSeq:AT1G79070-TAIR-G | EnsemblPlants:AT1G79070.1 | TAIR:AT1G79070.1 |
| EMBL:BT005483 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0031083 | RefSeq:NP_001320379.1 |
| RefSeq:NP_178028.2 | PFAM:PF14712 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31305 | UniProt:Q8GXI5 | InterPro:Snapin |
| InterPro:Snapin/Pallidin/Snn1 | UniParc:UPI000000C675 | : | : | : | : |
Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
Coordinates
chr1:-:29744271..29745815
Molecular Weight (calculated)
14884.2 Da
IEP (calculated)
4.329
GRAVY (calculated)
-0.496
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.