Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87410 | Canola | cytosol | 94.2 | 94.2 |
| AT1G79070.1 | Thale cress | nucleus | 78.26 | 78.26 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 46.38 | 47.06 |
| GSMUA_Achr11P... | Banana | cytosol | 45.65 | 44.68 |
| Solyc07g066370.2.1 | Tomato | cytosol | 44.93 | 41.61 |
| KRH13655 | Soybean | nucleus | 44.93 | 40.0 |
| PGSC0003DMT400056908 | Potato | nucleus | 42.75 | 38.56 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 39.13 | 37.5 |
| KRH43808 | Soybean | nucleus | 46.38 | 34.22 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 35.51 | 31.21 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 35.51 | 31.21 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 34.06 | 29.94 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 35.51 | 29.7 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 32.61 | 26.47 |
| KXG24345 | Sorghum | nucleus | 34.78 | 24.87 |
Protein Annotations
| EnsemblPlants:CDX88503 | EnsemblPlantsGene:GSBRNA2T00148054001 | GO:A0A078DMR1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0031083 |
| InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 | ncoils:Coil | PANTHER:PTHR31305 | PFAM:PF14712 | ProteinID:CDX88503 |
| ProteinID:CDX88503.1 | SEG:seg | UniParc:UPI0004EC379B | MapMan:35.2 | : | : |
Description
BnaC06g39470D
Coordinates
chrLK031855:-:1347601..1348497
Molecular Weight (calculated)
14748.2 Da
IEP (calculated)
4.905
GRAVY (calculated)
-0.386
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLSESSRR DSADVASSSS STAADGHIGG GGGGEAMARG LSAMLESVIK EFDSKSIDTL SSQDKLSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSMNLVL KSIQRRIDNI DHMLSANNIQ DKTASDTT
101: QRVSSMNLVL KSIQRRIDNI DHMLSANNIQ DKTASDTT
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.