Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P07100_001 | Banana | cytosol | 65.25 | 67.65 |
| CDX88503 | Canola | nucleus | 44.68 | 45.65 |
| AT1G79070.1 | Thale cress | nucleus | 43.26 | 44.2 |
| Bra035089.1-P | Field mustard | cytosol | 43.26 | 44.2 |
| CDX87410 | Canola | cytosol | 43.26 | 44.2 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 42.55 | 41.67 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 46.1 | 41.4 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 45.39 | 40.76 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 44.68 | 40.13 |
| Solyc07g066370.2.1 | Tomato | cytosol | 41.84 | 39.6 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 46.1 | 39.39 |
| KRH13655 | Soybean | nucleus | 43.26 | 39.35 |
| PGSC0003DMT400056908 | Potato | nucleus | 41.84 | 38.56 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 46.1 | 38.24 |
| KRH43808 | Soybean | nucleus | 43.97 | 33.16 |
| KXG24345 | Sorghum | nucleus | 43.97 | 32.12 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P25710_001 | EnsemblPlants:GSMUA_Achr11T25710_001 | EnsemblPlantsGene:GSMUA_Achr11G25710_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0031083 |
| InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 | ncoils:Coil | PANTHER:PTHR31305 | PFAM:PF14712 | SEG:seg |
| UniParc:UPI000295ED84 | UniProt:M0RVF1 | MapMan:35.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G25710_001]
Coordinates
chr11:+:24757674..24761586
Molecular Weight (calculated)
15025.8 Da
IEP (calculated)
4.620
GRAVY (calculated)
-0.326
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSDLPALP ASDSSVPPPS GGGGADGAEG PAWGREGCEA LAGAIASTLG AVMREFDSRA EGVDRSQDEL STSLDRLARE LDKLLEDAPL PFIMQHAAKI
101: SAMRRRVSAL NLILKSIQRR IDNMDRMLFA GVPTDNHQQI Q
101: SAMRRRVSAL NLILKSIQRR IDNMDRMLFA GVPTDNHQQI Q
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.