Factsheet for Bra035089.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016752.1-P
Bra019792.1-P
Bra021519.1-P
Bra026951.1-P
Bra035089.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79070.1	Bra016752.1-P	AT1G12840.1	21798944
AT1G79070.1	Bra019792.1-P	AT1G12840.1	21798944
AT1G79070.1	Bra026951.1-P	AT1G12840.1	21798944
AT1G79070.1	Bra035089.1-P	AT1G79070.1	21798944
AT1G79070.1	Bra021519.1-P	AT3G13940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87410	Canola	cytosol	100.0	100.0
AT1G79070.1	Thale cress	nucleus	79.71	79.71
GSMUA_Achr8P07100_001	Banana	cytosol	44.93	45.59
GSMUA_Achr11P...	Banana	cytosol	44.2	43.26
Solyc07g066370.2.1	Tomato	cytosol	44.2	40.94
KRH13655	Soybean	nucleus	44.93	40.0
PGSC0003DMT400056908	Potato	nucleus	42.03	37.91
VIT_19s0027g00470.t01	Wine grape	cytosol	39.13	37.5
KRH43808	Soybean	nucleus	44.93	33.16
TraesCS7A01G310700.1	Wheat	cytosol	35.51	31.21
TraesCS7D01G307200.1	Wheat	cytosol	35.51	31.21
TraesCS7B01G210500.1	Wheat	cytosol	34.06	29.94
Os08t0129900-00	Rice	cytosol, nucleus, plastid	34.06	28.48
Zm00001d049623_P002	Maize	cytoskeleton, cytosol, nucleus	31.88	25.88
KXG24345	Sorghum	nucleus	34.06	24.35

Protein Annotations

EnsemblPlants:Bra035089.1	EnsemblPlants:Bra035089.1-P	EnsemblPlantsGene:Bra035089	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0031083
InterPro:Snapin	InterPro:Snapin/Pallidin/Snn1	ncoils:Coil	PANTHER:PTHR31305	PFAM:PF14712	SEG:seg
UniParc:UPI0002541CD9	UniProt:M4F1Z2	MapMan:35.2	:	:	:

Description

AT1G79070 (E=2e-045) | SNARE-associated protein-related

Coordinates

chrA07:-:22112203..22112855

Molecular Weight (calculated)

14739.3 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.316

Length

138 amino acids

Sequence
(BLAST)

001: MEQLSESSHR DSADAASSSL TTAADVHVGG GGGGEAMARG LSAMLESVIK EFDSKSLDAL SSQDKLSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSMNLVL KSIQRRIDNI DHMLSANNIQ DKTASDTT

Best Arabidopsis Sequence Match ( AT1G79070.1 )
(BLAST)

001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT

Arabidopsis Description

SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.