CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

extracellular: 20458513
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	KRG93305	AT3G27960.1	21798944
AT4G26910.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14369	Soybean	nucleus	96.12	96.12
Solyc12g005080.1.1	Tomato	nucleus	61.64	77.3
VIT_19s0090g00750.t01	Wine grape	cytosol	60.34	71.43
Solyc07g064800.2.1	Tomato	extracellular, nucleus	71.77	71.15
VIT_10s0116g01480.t01	Wine grape	mitochondrion	72.2	70.82
Bra035551.1-P	Field mustard	mitochondrion	66.38	70.8
PGSC0003DMT400057449	Potato	mitochondrion	71.34	70.73
PGSC0003DMT400071652	Potato	mitochondrion	70.26	69.21
Os04t0394200-01	Rice	mitochondrion	65.52	69.09
GSMUA_Achr3P18670_001	Banana	mitochondrion	67.24	69.03
GSMUA_AchrUn_...	Banana	mitochondrion	67.24	69.03
CDY19918	Canola	mitochondrion	68.53	68.53
Bra002934.1-P	Field mustard	mitochondrion	68.75	68.45
CDY17300	Canola	mitochondrion	68.75	68.45
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	64.44	68.26
AT5G55070.1	Thale cress	mitochondrion	68.1	68.1
Os02t0514700-00	Rice	mitochondrion	58.41	68.09
TraesCS2D01G039500.2	Wheat	mitochondrion	65.3	68.09
TraesCS4D01G070200.1	Wheat	mitochondrion	64.22	68.04
TraesCS4B01G071300.1	Wheat	mitochondrion	64.22	68.04
CDY20790	Canola	mitochondrion	68.1	67.96
Zm00001d025258_P009	Maize	mitochondrion	65.3	67.94
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	65.09	67.87
CDY06613	Canola	mitochondrion	68.1	67.81
TraesCS2B01G053600.1	Wheat	mitochondrion	62.07	67.45
AT4G26910.1	Thale cress	mitochondrion	66.59	66.59
GSMUA_Achr9P01190_001	Banana	cytosol	70.47	65.79
CDY21016	Canola	mitochondrion, plastid	66.38	64.71
Zm00001d003923_P002	Maize	mitochondrion	65.95	64.69
Bra016809.1-P	Field mustard	mitochondrion, plastid	66.16	64.63
OQU93042	Sorghum	mitochondrion	64.66	64.24
CDY31217	Canola	mitochondrion, plastid	66.38	64.03
Bra028992.1-P	Field mustard	mitochondrion	67.67	63.56
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	64.44	62.82
CDY12012	Canola	plastid	67.24	59.77
CDY36727	Canola	plastid	68.1	59.07
KRG92074	Soybean	cytosol, mitochondrion	7.54	31.82
KRH06095	Soybean	mitochondrion	25.0	21.21
KRH47526	Soybean	mitochondrion	24.57	20.84
KRG91819	Soybean	endoplasmic reticulum, nucleus	19.18	19.14
KRH34962	Soybean	plastid	19.18	18.98
KRG90801	Soybean	endoplasmic reticulum, nucleus	20.26	18.58
KRH75381	Soybean	plastid	17.03	18.5
KRH50815	Soybean	mitochondrion	20.04	18.06
Os01t0314100-01	Rice	mitochondrion	20.04	17.78
KRH34708	Soybean	mitochondrion	25.86	17.75
KRH02272	Soybean	mitochondrion	19.18	17.28
KRG92075	Soybean	mitochondrion	18.75	16.8
Os01t0314000-01	Rice	cytosol	0.86	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:100799149	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	EMBL:ACUP02001288	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlantsGene:GLYMA_02G292500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016746	GO:GO:0045252	UniProt:I1JJB5	InterPro:IPR000089	InterPro:IPR023213
EnsemblPlants:KRH73773	ProteinID:KRH73773	ProteinID:KRH73773.1	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189
PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	MetaCyc:PWY-5084	SUPFAM:SSF51230	SUPFAM:SSF52777
InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI0001CABAA3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:47153091..47160573

Molecular Weight (calculated)

50499.0 Da

IEP (calculated)

9.844

GRAVY (calculated)

-0.210

Length

464 amino acids

Sequence
(BLAST)

001: MFGVVRRRVA SGSPSPWLLG QSAQKIRSGP SVSARASSIV EKEIVFRSGG CGFVQNFSHI TPGSWINSKP MRVVIHPEAT VRTWGRLFSS ESGDTVDVVV
101: PPLAESISDG TLAQFLKRPG DRVNADEPIA QIETDKVTID VSSPESGVIL KLLANEGDTV EPGNKIAIIS RSADATHVAP SETISEKAAP QPTQKVSEEK
201: KAPKVETAPA KEKPKTPPAT LKSPTEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAM LTTFNEVDMT NLMKLRSDYK DAFVEKHGVK LGLMSGFVKA
301: AVNALQHQPI VNAVIDGDDI IYRDYIDISI AVGTPKGLVV PVIRNADTMN FADIEKQINT FAKKANDGSL SIDEMAGGTL TISNGGVYGS LLSTPIINPP
401: QSAILGMHSI VSRPTVVGGN IVPRPMMYVA LTYDHRIIDG REAVFFLRRI KDIVEDPRRL LLDI

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.