Factsheet for TraesCS4A01G243500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, unclear

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G26910.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G26910.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G071300.1	Wheat	mitochondrion	99.54	99.54
TraesCS4D01G070200.1	Wheat	mitochondrion	99.32	99.32
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	99.32	91.39
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	84.47	83.15
Os02t0514700-00	Rice	mitochondrion	74.2	81.66
Solyc12g005080.1.1	Tomato	nucleus	63.7	75.41
VIT_19s0090g00750.t01	Wine grape	cytosol	61.87	69.13
Bra035551.1-P	Field mustard	mitochondrion	67.12	67.59
PGSC0003DMT400071652	Potato	mitochondrion	71.0	66.03
Solyc07g064800.2.1	Tomato	extracellular, nucleus	69.63	65.17
VIT_10s0116g01480.t01	Wine grape	mitochondrion	70.32	65.12
CDY17300	Canola	mitochondrion	69.18	65.02
Bra002934.1-P	Field mustard	mitochondrion	69.18	65.02
KRH14369	Soybean	nucleus	68.72	64.87
AT5G55070.1	Thale cress	mitochondrion	68.72	64.87
PGSC0003DMT400057449	Potato	mitochondrion	69.18	64.74
CDY19918	Canola	mitochondrion	68.49	64.66
KRH73773	Soybean	mitochondrion	68.26	64.44
CDY06613	Canola	mitochondrion	68.49	64.38
CDY20790	Canola	mitochondrion	68.26	64.3
AT4G26910.1	Thale cress	mitochondrion	66.21	62.5
Bra028992.1-P	Field mustard	mitochondrion	68.26	60.53
CDY21016	Canola	mitochondrion, plastid	65.3	60.08
Bra016809.1-P	Field mustard	mitochondrion, plastid	65.07	60.0
CDY31217	Canola	mitochondrion, plastid	65.3	59.46
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.47	58.42
CDY12012	Canola	plastid	68.72	57.66
CDY36727	Canola	plastid	68.95	56.45
TraesCS7A01G305100.1	Wheat	mitochondrion	25.8	25.57
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	27.4	22.18
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	26.94	21.89
TraesCS6A01G022600.2	Wheat	golgi	26.71	21.75
TraesCS5A01G476700.1	Wheat	plastid	21.23	19.62
TraesCS5A01G119600.1	Wheat	plastid	19.41	18.64
TraesCS5A01G206600.2	Wheat	plastid	18.04	17.03
TraesCS2A01G074700.1	Wheat	nucleus	19.86	17.03

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968
PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB
TIGRFAMs:TIGR01347	EnsemblPlantsGene:TraesCS4A01G243500	EnsemblPlants:TraesCS4A01G243500.1	TIGR:cd06849	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:553446992..553451942

Molecular Weight (calculated)

47888.8 Da

IEP (calculated)

8.929

GRAVY (calculated)

-0.213

Length

438 amino acids

Sequence
(BLAST)

001: MASRLASRLL LRRPAAVLSL LQSSRHARHF STQLLEGAPR LPKPTCERYF LRNASPYQIW SRSFASENGD LVEAVVPFMG ESVTDGTLAN FLKKPGDRVE
101: ADEAIAQIET DKVTIDVSSP EAGVIEKFIA SEGDTVTPGT KIAVISKSAA PSEAHVAPSE ETSQKETPPP PPPEKPKVEA KSPKVESVKP QASKLASPSE
201: PQLPPKERER RVSMPRLRKR IANRLKDSQN TFALLTTFNE VDMTNLMKLR TDYKDEFVKK HGVKLGLMSC FVKAAVSALQ NQPIVNAVID GDDIIYRDYI
301: DVSVAVGTSK GLVVPVIRDT EGMNFADIEK GINSLAKKAT EGALSIDEMA GGTFTISNGG VYGSLISTPI INPPQSAILG MHSIVQRPVV VDGSILARPM
401: MYLALTYDHR LIDGREAVLF LRRIKDVVED PRRLLLDI

Best Arabidopsis Sequence Match ( AT4G26910.1 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PAGNSGISRS ASLVSSTLQR WVRPFSAETG DTVEAVVPHM
101: GESITDGTLA TFLKKPGERV QADEAIAQIE TDKVTIDIAS PASGVIQEFL VNEGDTVEPG TKVAIISKSE DTASQVTPSQ KIPETTDTKP SPPAEDKQKP
201: RVESAPVAEK PKAPSSPPPP KQSAKEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFYEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRGADKMN FAEIEKTINS LAKKANEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VSRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRV KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.