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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G481800.3 mitochondrion, mitochondrion, mitochondrion
TraesCS6A01G022600.2 mitochondrion, mitochondrion, mitochondrion
TraesCS6B01G028600.1 mitochondrion, mitochondrion, mitochondrion
TraesCS6D01G024400.1 mitochondrion, mitochondrion, mitochondrion
TraesCS7A01G014600.4 mitochondrion, mitochondrion, mitochondrion
TraesCS7D01G011600.1 mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54220.1 TraesCS4A01G481800.3 AT1G54220.1 24846799
AT1G54220.1 TraesCS6A01G022600.2 AT1G54220.1 24846799
AT1G54220.1 TraesCS6B01G028600.1 AT1G54220.1 24846799
AT1G54220.1 TraesCS6D01G024400.1 AT1G54220.1 24846799
AT1G54220.1 TraesCS7A01G014600.4 AT1G54220.1 24846799
AT1G54220.1 TraesCS7D01G011600.1 AT1G54220.1 24846799
AT1G54220.1 TraesCS4A01G481800.3 AT3G13930.1 24846799
AT1G54220.1 TraesCS6A01G022600.2 AT3G13930.1 24846799
AT1G54220.1 TraesCS6B01G028600.1 AT3G13930.1 24846799
AT1G54220.1 TraesCS6D01G024400.1 AT3G13930.1 24846799
AT1G54220.1 TraesCS7A01G014600.4 AT3G13930.1 24846799
AT1G54220.1 TraesCS7D01G011600.1 AT3G13930.1 24846799
AT3G13930.1 TraesCS4A01G481800.3 AT3G13930.1 24846799
AT3G13930.1 TraesCS6A01G022600.2 AT3G13930.1 24846799
AT3G13930.1 TraesCS6B01G028600.1 AT3G13930.1 24846799
AT3G13930.1 TraesCS6D01G024400.1 AT3G13930.1 24846799
AT3G13930.1 TraesCS7A01G014600.4 AT3G13930.1 24846799
AT3G13930.1 TraesCS7D01G011600.1 AT3G13930.1 24846799
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G028600.1 Wheat mitochondrion 97.58 98.68
TraesCS6D01G024400.1 Wheat golgi, mitochondrion 97.58 96.86
HORVU6Hr1G003770.1 Barley cytosol, mitochondrion 95.35 96.07
EES04754 Sorghum mitochondrion 83.83 83.67
Os07t0410100-01 Rice mitochondrion 83.83 83.36
Os02t0105200-01 Rice mitochondrion 83.09 81.57
Zm00001d053580_P002 Maize mitochondrion 82.34 80.4
TraesCS7A01G014600.4 Wheat golgi, mitochondrion 74.54 74.12
TraesCS4A01G481800.3 Wheat mitochondrion, unclear 74.16 74.03
Zm00001d016365_P002 Maize mitochondrion 81.97 71.47
AT3G13930.1 Thale cress mitochondrion 63.38 63.27
KRH47526 Soybean mitochondrion 64.31 63.25
KRH06095 Soybean mitochondrion 64.13 63.07
Solyc07g006790.2.1 Tomato plastid 64.31 62.57
PGSC0003DMT400048225 Potato mitochondrion 63.75 62.14
Bra001531.1-P Field mustard mitochondrion, plastid 53.72 62.02
VIT_09s0002g01800.t01 Wine grape mitochondrion 63.94 61.98
VIT_11s0016g01870.t01 Wine grape mitochondrion 62.64 61.61
Bra037976.1-P Field mustard mitochondrion 61.9 61.55
AT1G54220.1 Thale cress mitochondrion 61.52 61.41
Bra027386.1-P Field mustard mitochondrion 56.88 61.2
CDX82504 Canola plastid 61.15 61.15
CDY55206 Canola mitochondrion 57.62 60.55
CDY24058 Canola mitochondrion 61.52 59.64
CDX97529 Canola mitochondrion 62.27 59.61
CDY33075 Canola mitochondrion, plastid 61.34 59.46
CDX75740 Canola mitochondrion, plastid 61.9 59.36
GSMUA_Achr10P... Banana mitochondrion, vacuole 64.68 54.8
TraesCS7A01G305100.1 Wheat mitochondrion 35.13 42.76
TraesCS5A01G119600.1 Wheat plastid 24.91 29.39
TraesCS5A01G476700.1 Wheat plastid 25.84 29.32
TraesCS4A01G243500.1 Wheat golgi, mitochondrion, unclear 21.75 26.71
TraesCS2A01G041100.1 Wheat golgi, nucleus, unclear 21.38 25.84
TraesCS5A01G206600.2 Wheat plastid 22.12 25.65
TraesCS2A01G074700.1 Wheat nucleus 21.93 23.09
Protein Annotations
KEGG:00010+2.3.1.12KEGG:00020+2.3.1.12KEGG:00620+2.3.1.12InterPro:2-oxoA_DH_lipoyl-BSInterPro:2-oxoacid_DH_actylTfraseMapMan:2.2.1.2
Gene3D:2.40.50.100Gene3D:3.30.559.10Gene3D:4.10.320.10InterPro:Biotin_lipoylInterPro:CAT-like_dom_sfInterPro:E3-bd_dom_sf
GO:GO:0003674GO:GO:0003824GO:GO:0004742GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006090GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740
GO:GO:0016746GO:GO:0045254InterPro:IPR000089InterPro:IPR004167InterPro:IPR023213InterPro:IPR036625
InterPro:LAT1PFAM:PF00198PFAM:PF00364PFAM:PF02817ScanProsite:PS00189PFscan:PS50968
PFscan:PS51826InterPro:PSBDPANTHER:PTHR43178PANTHER:PTHR43178:SF4SUPFAM:SSF47005SUPFAM:SSF51230
SUPFAM:SSF52777InterPro:Single_hybrid_motifTIGRFAMs:TIGR01349EnsemblPlantsGene:TraesCS6A01G022600EnsemblPlants:TraesCS6A01G022600.2TIGR:cd06849
SEG:seg:::::
Description
No Description!
Coordinates
chr6A:+:11268403..11274033
Molecular Weight (calculated)
57708.9 Da
IEP (calculated)
8.288
GRAVY (calculated)
-0.338
Length
538 amino acids
Sequence
(BLAST)
001: MQLRSLRNAV DCERTSLARY FSTGSGSSAV KENVLMVSAG VEKRIGGARF SQYKQPGKEL ETFKVSLGGV NGSSTCRRML INRAPSAVTG LNGSLSCGRV
101: ASARSFSSSA DLPPHQEIGM PSLSPTMTEG NIAKWIKKEG DKVSPGEVLC EVETDKATVE MECMEEGYLA KIVQGDGAKE IKVGEVICVT VEEEGDIEKF
201: KDYKPSAADA PAAPSESKAT PEPAAPKVEE KVPAKAPEPK APKAGKASRS GDRIFASPLA RKLAEDNNVQ LSSVKGTGPD GRILKADIED YLAKGGKSES
301: FAASGLDYTD IPNAQIRKVT ANRLLASKQT IPHYYLTVDT RVDKLIKLRG ELNPLQEASG GKKISINDLV IKAAALALRK VPECNSSWMN DFIRQYHNVN
401: INVAVQTEHG LFVPVVRDAD KKGLGTIGEE VKQLAQRARD NSLKPQDYEG GTFTVSNLGG PFGIKQFCAI INPPQSAILA IGSAEKRVIP GSADGQYEFG
501: SYMSVTMSCD HRVIDGAIGA EFLKAFKGYI ENPTTMLL
Best Arabidopsis Sequence Match ( AT1G54220.1 )
(BLAST)
001: MAYASRIINH SKKLKDVSTL LRRENAATIR YYSNTNRAPL NREDTFNSRL GYPPLERISI CSTSTLPVSI IFSTTRSNLS SAMGRPIFGK EFSCLMQSAR
101: GFSSGSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGYLAKIVK AEGSKEIQVG EVIAITVEDE EDIGKFKDYT
201: PSSTADAAPT KAEPTPAPPK EEKVKQPSSP PEPKASKPST PPTGDRVFAS PLARKLAEDN NVPLSDIEGT GPEGRIVKAD IDEYLASSGK GATAKPSKST
301: DSKAPALDYV DIPHSQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKLMALR SQLNSFKEAS GGKRISVNDL VVKAAALALR KVPQCNSSWT DDYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DRKGLSTIGE EVRLLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VVNPPQAAIL AVGSAEKRVV PGNGPDQFNF
501: ASYMPVTLSC DHRVVDGAIG AEWLKAFKGY IENPKSMLL
Arabidopsis Description
Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.