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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 8
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 mitochondrion: 19010998
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0105200-01 mitochondrion, mitochondrion, mitochondrion
Os06t0105400-02 mitochondrion, mitochondrion, mitochondrion
Os07t0410100-01 mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54220.1 Os02t0105200-01 AT1G54220.1 24846799
AT1G54220.1 Os06t0105400-02 AT1G54220.1 24846799
AT1G54220.1 Os07t0410100-01 AT1G54220.1 24846799
AT1G54220.1 Os02t0105200-01 AT3G13930.1 24846799
AT1G54220.1 Os06t0105400-02 AT3G13930.1 24846799
AT1G54220.1 Os07t0410100-01 AT3G13930.1 24846799
AT3G13930.1 Os02t0105200-01 AT3G13930.1 24846799
AT3G13930.1 Os06t0105400-02 AT3G13930.1 24846799
AT3G13930.1 Os07t0410100-01 AT3G13930.1 24846799
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0410100-01 Rice mitochondrion 88.87 90.02
TraesCS6D01G024400.1 Wheat golgi, mitochondrion 83.58 84.5
TraesCS6B01G028600.1 Wheat mitochondrion 81.75 84.21
HORVU6Hr1G003770.1 Barley cytosol, mitochondrion 81.57 83.71
TraesCS6A01G022600.2 Wheat golgi 81.57 83.09
EES04754 Sorghum mitochondrion 81.2 82.56
Zm00001d053580_P002 Maize mitochondrion 80.84 80.4
Os06t0105400-02 Rice mitochondrion 74.82 74.55
Zm00001d016365_P002 Maize mitochondrion 79.93 70.99
KRH47526 Soybean mitochondrion 62.96 63.07
VIT_09s0002g01800.t01 Wine grape mitochondrion 63.69 62.88
Solyc07g006790.2.1 Tomato plastid 63.32 62.75
KRH06095 Soybean mitochondrion 62.23 62.34
PGSC0003DMT400048225 Potato mitochondrion 62.77 62.32
VIT_11s0016g01870.t01 Wine grape mitochondrion 62.04 62.16
AT3G13930.1 Thale cress mitochondrion 60.95 61.97
AT1G54220.1 Thale cress mitochondrion 60.22 61.22
Bra037976.1-P Field mustard mitochondrion 59.85 60.63
Bra001531.1-P Field mustard mitochondrion, plastid 51.46 60.52
CDX82504 Canola plastid 59.12 60.22
Bra027386.1-P Field mustard mitochondrion 54.93 60.2
CDY55206 Canola mitochondrion 55.47 59.38
CDY33075 Canola mitochondrion, plastid 60.04 59.28
CDY24058 Canola mitochondrion 59.85 59.1
CDX97529 Canola mitochondrion 60.58 59.07
CDX75740 Canola mitochondrion, plastid 60.22 58.82
GSMUA_Achr10P... Banana mitochondrion, vacuole 65.15 56.22
Os06t0499900-01 Rice mitochondrion 33.39 37.81
Os08t0431300-01 Rice plastid 26.64 30.74
Os12t0182200-01 Rice plastid 26.09 30.62
Os04t0394200-01 Rice mitochondrion 23.18 28.86
Os02t0514700-00 Rice mitochondrion 19.89 27.39
Os09t0408600-01 Rice plastid 24.45 26.75
Os01t0314100-01 Rice mitochondrion 22.99 24.09
Os01t0314000-01 Rice cytosol 0.91 0.94
Protein Annotations
KEGG:00010+2.3.1.12KEGG:00020+2.3.1.12KEGG:00620+2.3.1.12InterPro:2-oxoA_DH_lipoyl-BSInterPro:2-oxoacid_DH_actylTfraseMapMan:2.2.1.2
Gene3D:2.40.50.100Gene3D:3.30.559.10Gene3D:4.10.320.10EntrezGene:4328010EMBL:AK063525ProteinID:BAD06281.1
ProteinID:BAD07541.1ProteinID:BAD28078.1ProteinID:BAF07532.1ProteinID:BAS76556.1InterPro:Biotin_lipoylInterPro:CAT-like_dom_sf
InterPro:E3-bd_dom_sfProteinID:EEE56142.1GO:GO:0003674GO:GO:0003824GO:GO:0004742GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005759GO:GO:0006090
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0016746GO:GO:0045254
InterPro:IPR000089InterPro:IPR004167InterPro:IPR023213InterPro:IPR036625InterPro:LAT1EnsemblPlantsGene:Os02g0105200
EnsemblPlants:Os02t0105200-01PFAM:PF00198PFAM:PF00364PFAM:PF02817ScanProsite:PS00189PFscan:PS50968
PFscan:PS51826InterPro:PSBDPANTHER:PTHR43178PANTHER:PTHR43178:SF4UniProt:Q6YPG2SUPFAM:SSF47005
SUPFAM:SSF51230SUPFAM:SSF52777InterPro:Single_hybrid_motifTIGRFAMs:TIGR01349UniParc:UPI000022F339RefSeq:XP_015627700.1
SEG:seg:::::
Description
Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12). (Os02t0105200-01)
Coordinates
chr2:+:287571..293885
Molecular Weight (calculated)
59001.4 Da
IEP (calculated)
8.133
GRAVY (calculated)
-0.372
Length
548 amino acids
Sequence
(BLAST)
001: MSAAHLLRHS RKLRTLRDAL DYDRSALVRY FSAASASFPT KGGAAAGVEK RIGGARFPQC KQPGKELETF KVSLGGLNGR YACRRAPNNC IPTTITGLNG
101: SLSCGQVSSA RSFSSSADLP PHQEIGMPSL SPTMTEGNIA RWLKKEGDKV SPGEVLCEVE TDKATVEMEC MEEGYLAKII HGDGAKEIKV GEIIAVTVEE
201: EGDLEKFKDY KPSTSAAPAA PSEPKAQPEP AEPKVKETEP SRTPEPKAPK TEEASQPGGR IFSSPLARKL AEDNNVPLSS VMGTGPDGRI LKADIEDYLA
301: SVAKGGKREA LAAPGLSYTD VPNTQIRKVT ANRLLSSKQT IPHYYLTVDA RVDNLIKLRG ELNPLQESSG GKKISINDLV IKAAALALRK VPQCNSSWMS
401: DFIRQYHNVN INVAVQTEHG LFVPVIRDAD KKGLGTIAEE VKQVAQRARD NSLKPEDYEG GTFTISNLGG PFGIKQFCAI INPPQSAILA IGTAEKRVIP
501: GSVDGQYEFG SFMSATMSCD HRVIDGAIGA EFLKAFKGYI ENPNSMLL
Best Arabidopsis Sequence Match ( AT3G13930.1 )
(BLAST)
001: MASRIINHSK KLKHVSALLR RDHAVAVRCF SNSTHPSLVG REDIFKARLN YSSVERISKC GTGNVTMLSG ISTTSTKLSS PMAGPKLFKE FISSQMRSVR
101: GFSSSSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGFLAKIVK EEGAKEIQVG EVIAITVEDE DDIQKFKDYT
201: PSSDTGPAAP EAKPAPSLPK EEKVEKPASA PEAKISKPSS APSEDRIFAS PLARKLAEDN NVPLSSIKGT GPEGRIVKAD VEDFLASGSK ETTAKPSKQV
301: DSKVPALDYV DIPHTQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKMMGLR SQLNSFQEAS GGKRISVNDL VIKAAALALR KVPQCNSSWT DEYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DKKGLSTIGE EVRFLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VINPPQAAIL AIGSAEKRVV PGTGPDQYNV
501: ASYMSVTLSC DHRVIDGAIG AEWLKAFKGY IETPESMLL
Arabidopsis Description
Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.