Factsheet for Os09t0408600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

nucleus: 19621931
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0219000-00
Os08t0129900-00
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	Os12t0182200-01	AT1G34430.1	21798944
AT3G25860.1	Os08t0129900-00	AT1G79070.1	21798944
AT3G25860.1	Os01t0219000-00	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89472	Sorghum	plastid	74.85	81.7
HORVU5Hr1G061140.1	Barley	plastid	75.25	81.43
TraesCS5D01G212800.1	Wheat	plastid	75.05	81.21
TraesCS5B01G204800.1	Wheat	plastid	74.85	80.99
TraesCS3B01G372900.1	Wheat	plastid	72.65	80.18
Zm00001d020426_P001	Maize	plastid	72.46	79.96
TraesCS5A01G206600.2	Wheat	plastid	69.66	75.22
GSMUA_Achr3P07350_001	Banana	cytosol	59.48	73.22
Os08t0431300-01	Rice	plastid	67.66	71.37
Solyc05g009530.2.1	Tomato	plastid	60.28	65.8
Bra017345.1-P	Field mustard	plastid	62.08	64.93
CDY39183	Canola	plastid	61.08	64.83
PGSC0003DMT400033754	Potato	plastid	59.48	64.78
CDY04184	Canola	plastid	61.88	64.72
VIT_01s0011g03380.t01	Wine grape	plastid	62.67	64.34
CDX83563	Canola	plastid	61.08	64.29
AT3G25860.1	Thale cress	plastid	61.48	64.17
Bra025167.1-P	Field mustard	plastid	60.88	63.94
CDY13593	Canola	plastid	60.88	63.94
KRH75381	Soybean	plastid	53.69	63.0
KRG90801	Soybean	endoplasmic reticulum, nucleus	62.28	61.66
Os12t0182200-01	Rice	plastid	57.29	61.46
Os06t0499900-01	Rice	mitochondrion	24.55	25.41
Os07t0410100-01	Rice	mitochondrion	26.95	24.95
Os02t0105200-01	Rice	mitochondrion	26.75	24.45
Os06t0105400-02	Rice	mitochondrion	25.95	23.64
Os02t0514700-00	Rice	mitochondrion	17.17	21.61
Os04t0394200-01	Rice	mitochondrion	18.56	21.14
Os01t0314100-01	Rice	mitochondrion	21.16	20.27
Os01t0314000-01	Rice	cytosol	0.6	0.57

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	EntrezGene:4347022
MapMan:5.1.2.2.2	EMBL:AK060606	ProteinID:BAD36253.1	ProteinID:BAF25056.1	ProteinID:BAT08028.1	InterPro:Biotin_lipoyl
InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
EnsemblPlantsGene:Os09g0408600	EnsemblPlants:Os09t0408600-01	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	UniProt:Q69N33
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0000403A18	RefSeq:XP_015651158.1
SEG:seg	:	:	:	:	:

Description

Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12). (Os09t0408600-01)

Coordinates

chr9:-:14454765..14457455

Molecular Weight (calculated)

52293.7 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.057

Length

501 amino acids

Sequence
(BLAST)

001: MLLPPLVVGS TMASLASLSL PVSTASQGRA RGAGPVTAAP RRRRVSVVRA KVREIFMPAL SSTMTEGRIV SWTAAEGDRV AKGDPVVVVE SDKADMDVET
101: FYDGIVAVVL VPAGESAPVG APIALLAESE EEVAVAQARA QALPRGPGQE PPPPHVPKAA PPPPPPPPPH APPGPPPTKG VATPHAKKLA KQHRVDISMV
201: VGTGPHGRVT GADVEAAAGI KPKLKGPKGA PPPPPPPPPS PHRHPAAHPP PPPHHPAPRP PPPMAAAPRQ PAALPPVPGA TVVPFTTMQA AVSRNMMESL
301: SVPTFRVGYA VCTDKLDALC EKVKSKGVTK TLLLVKAAAM ALTQHPVVNA SCRDGKSFSY NSSINIAVAV AIEGGLLTPV LEDVDKLDVY LLAQKWRGLL
401: KKARMKQLQP DEYSSGTFTL SNLGMFGVDR FDAILPPGQG AIMAVGGSRP TLVANKDGFF SIKNEMLVNV TADHRIIYGA DLAAFLQTFA KIIEDPESLT
501: L

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.