Factsheet for Os04t0394200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0708400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	Os02t0708400-01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G039500.2	Wheat	mitochondrion	91.14	90.11
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	90.91	89.89
TraesCS2B01G053600.1	Wheat	mitochondrion	87.05	89.7
Zm00001d025258_P009	Maize	mitochondrion	89.09	87.89
OQU93042	Sorghum	mitochondrion	88.18	83.08
Zm00001d003923_P002	Maize	mitochondrion	88.86	82.66
Os02t0514700-00	Rice	mitochondrion	72.05	79.65
Solyc12g005080.1.1	Tomato	nucleus	65.23	77.57
VIT_19s0090g00750.t01	Wine grape	cytosol	62.27	69.9
Bra035551.1-P	Field mustard	mitochondrion	67.73	68.51
PGSC0003DMT400071652	Potato	mitochondrion	71.36	66.67
Solyc07g064800.2.1	Tomato	extracellular, nucleus	70.45	66.24
Bra002934.1-P	Field mustard	mitochondrion	70.0	66.09
CDY17300	Canola	mitochondrion	70.0	66.09
AT5G55070.1	Thale cress	mitochondrion	69.55	65.95
KRH14369	Soybean	nucleus	69.55	65.95
CDY06613	Canola	mitochondrion	69.55	65.67
PGSC0003DMT400057449	Potato	mitochondrion	69.77	65.6
VIT_10s0116g01480.t01	Wine grape	mitochondrion	70.45	65.54
KRH73773	Soybean	mitochondrion	69.09	65.52
CDY19918	Canola	mitochondrion	69.09	65.52
CDY20790	Canola	mitochondrion	69.09	65.38
AT4G26910.1	Thale cress	mitochondrion	67.27	63.79
Bra028992.1-P	Field mustard	mitochondrion	68.86	61.34
CDY21016	Canola	mitochondrion, plastid	65.0	60.08
Bra016809.1-P	Field mustard	mitochondrion, plastid	64.77	60.0
CDY31217	Canola	mitochondrion, plastid	65.23	59.67
CDY12012	Canola	plastid	69.32	58.43
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.41	58.42
CDY36727	Canola	plastid	69.32	57.01
Os06t0499900-01	Rice	mitochondrion	27.73	25.21
Os07t0410100-01	Rice	mitochondrion	29.77	24.21
Os02t0105200-01	Rice	mitochondrion	28.86	23.18
Os06t0105400-02	Rice	mitochondrion	27.95	22.36
Os08t0431300-01	Rice	plastid	20.91	19.37
Os12t0182200-01	Rice	plastid	20.23	19.06
Os09t0408600-01	Rice	plastid	21.14	18.56
Os01t0314100-01	Rice	mitochondrion	20.45	17.21
Os01t0314000-01	Rice	cytosol	0.91	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	EntrezGene:4335689	EMBL:AK121002	ProteinID:BAF14566.1	ProteinID:BAS88991.1	InterPro:Biotin_lipoyl
ProteinID:CAD40552.1	InterPro:CAT-like_dom_sf	ProteinID:EAZ30565.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	EnsemblPlantsGene:Os04g0394200	EnsemblPlants:Os04t0394200-01	PFAM:PF00198	PFAM:PF00364
ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	UniProt:Q7XVM2	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI00001B1D24	RefSeq:XP_015636839.1
SEG:seg	:	:	:	:	:

Description

Similar to 2-oxoglutarate dehydrogenase E2 subunit. (Os04t0394200-01);Similar to 2-oxoglutarate dehydrogenase E2 subunit. (Os04t0394200-02);Similar to 2-oxoglutarate dehydrogenase E2 subunit. (Os04t0394200-03)

Coordinates

chr4:+:19378313..19382688

Molecular Weight (calculated)

48286.1 Da

IEP (calculated)

9.054

GRAVY (calculated)

-0.297

Length

440 amino acids

Sequence
(BLAST)

001: MASRIASRLL RRSNATLGLI RSYSHARNYS SQLSALIPIG SQSSKLTRRR YYLPNASPYQ LWSRSFASDN GDQVEAVVPF MGESVTDGTL ANFLKKPGDR
101: VEADEPIAQI ETDKVTIDVA SPEAGVIEKF IASEGDTVTP GTKVAIISKS AAPAETHVAP SEDSTPKETP PKAEETKPKL EEKSPKAEPP KMPLPPKTSP
201: TEPQLPPKER ERRVPMPRLR KRIANRLKDS QNTFAMLTTF NEVDMTNLMK LRSDYKDEFV TKHGVKLGLM SCFVKAAVTA LQNQPIVNAV IDGDDIIYRD
301: YVDISVAVGT SKGLVVPVIR DADNMNFADI EKGINALAKK ATEGALSIDE MAGGTFTISN GGVYGSLIST PIINPPQSAI LGMHSIVQRP VVVDGNILAR
401: PMMYLALTYD HRLIDGREAV YFLRRIKDVV EDPRRLLLDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.