Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05647 | Sorghum | cytosol | 91.42 | 91.16 |
| TraesCS6B01G302000.1 | Wheat | cytosol | 90.58 | 90.7 |
| TraesCS6A01G274500.1 | Wheat | cytosol | 90.44 | 90.69 |
| HORVU6Hr1G069310.1 | Barley | cytosol | 90.3 | 90.68 |
| TraesCS6D01G254800.1 | Wheat | cytosol | 90.01 | 90.14 |
| Zm00001d051589_P001 | Maize | cytosol | 90.15 | 89.9 |
| Zm00001d017793_P001 | Maize | cytosol | 88.19 | 87.94 |
| GSMUA_Achr10P... | Banana | cytosol | 71.45 | 76.97 |
| GSMUA_Achr2P09630_001 | Banana | nucleus | 68.78 | 68.39 |
| VIT_17s0000g08260.t01 | Wine grape | cytosol | 68.35 | 65.85 |
| PGSC0003DMT400062960 | Potato | cytosol | 65.68 | 63.97 |
| Solyc03g114320.2.1 | Tomato | cytosol | 65.4 | 63.7 |
| VIT_14s0066g01280.t01 | Wine grape | cytosol | 59.07 | 62.69 |
| KRH56614 | Soybean | cytosol | 60.2 | 60.97 |
| KRH63534 | Soybean | nucleus | 62.03 | 60.74 |
| KRG93305 | Soybean | cytosol | 59.77 | 60.71 |
| Bra025315.1-P | Field mustard | cytosol | 55.7 | 59.64 |
| CDX86457 | Canola | cytosol | 55.7 | 59.64 |
| AT3G27960.1 | Thale cress | cytosol | 55.27 | 59.28 |
| CDY58518 | Canola | cytosol | 54.57 | 59.06 |
| KRH54405 | Soybean | cytosol | 60.76 | 57.37 |
| AT1G27500.2 | Thale cress | cytosol | 52.6 | 56.58 |
| Os02t0109800-01 | Rice | plasma membrane | 47.12 | 55.93 |
| PGSC0003DMT400001405 | Potato | cytosol | 56.26 | 55.87 |
| Solyc02g086840.2.1 | Tomato | cytosol | 55.56 | 55.56 |
| CDY27619 | Canola | nucleus | 51.34 | 55.39 |
| Bra032832.1-P | Field mustard | nucleus | 51.34 | 55.39 |
| CDX90092 | Canola | cytosol, mitochondrion | 9.56 | 54.4 |
| KRH57064 | Soybean | cytosol | 54.15 | 52.74 |
| CDY56191 | Canola | cytosol | 52.18 | 52.11 |
| KRH03299 | Soybean | cytosol | 26.72 | 47.62 |
| Os03t0149400-01 | Rice | mitochondrion | 16.17 | 23.09 |
| Os02t0820300-01 | Rice | mitochondrion | 19.83 | 22.71 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:21.1.1.4.3 | EntrezGene:4330477 | ProteinID:AAL87157.1 | EMBL:AK068408 | ProteinID:BAD08110.1 |
| ProteinID:BAF09797.1 | ProteinID:BAS80539.1 | ncoils:Coil | ProteinID:EEE57657.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | EnsemblPlantsGene:Os02g0708400 | EnsemblPlants:Os02t0708400-01 |
| PFAM:PF13176 | PFAM:PF13181 | PFAM:PF13424 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR19959 |
| PANTHER:PTHR19959:SF156 | UniProt:Q8S3S1 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_repeat | UniParc:UPI00000A80AE | RefSeq:XP_015625780.1 | SEG:seg | : | : |
Description
Tetratricopeptide-like helical domain containing protein. (Os02t0708400-01)
Coordinates
chr2:-:29287709..29291570
Molecular Weight (calculated)
76956.5 Da
IEP (calculated)
4.890
GRAVY (calculated)
-0.469
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGIIVDGVV TEEAQNEVNS SQNKDNSSAP RSPVASKSMH SEALEMHVEG SGAGEPSIEQ LYNNVCEMES SSEGGSPSRE SFGSDGEESR IDSELRHLVA
101: GEMEAMKVIE EEEGEGSGNA ANAVTAAENG TPVKAMSSNS SKKSSKKAAK SQLESESSVG PNGKASTEEG EAEVSKPGSR VGRRRKASPN PHNGTEDAGL
201: NNPDLGPFLL KHARDLIASD NPRRALKYAL RATKSFEKCA GGKPSLNLVM SLHVVAAIYC NLGKYDEAVP VLQRSLEIPV IEEGQEHALA KFSGCMQLGD
301: TYGMLGQTAL SLQWYAAGLE IQKQTLGEQD PRVGETCRYL AEAHVQALQL DEAQRLCQKA LDIHRENGEP ASLEETADRR LMGLICDTKG DHEAALEHLV
401: MASMAMVANG QETEVASVDC SIGDIYLSLG RYDEAVFSYQ KALTVFKTSK GENHATVASV FVRLADLYNK TGKLRESKSY CENALKIYQK PIPGTSLEEI
501: ATGLTDVSAI YETMNEHEQA LKLLQKALKM YNNSAGQQST IAGIEAQMGV LHYILGNYGE AYDSFKSAIA KLRTCGEKKT AFFGVALNQM GLACVQRYSI
601: NEAAELFEEA RAVLEQEYGP YHPDTLGVYS NLAGTYDAMG RLDEAIEILE HVVGMREEKL GTANPDVDDE KRRLAELLKE AGRGRSRKAK SLENLLETNP
701: YTVTKRGTVA A
101: GEMEAMKVIE EEEGEGSGNA ANAVTAAENG TPVKAMSSNS SKKSSKKAAK SQLESESSVG PNGKASTEEG EAEVSKPGSR VGRRRKASPN PHNGTEDAGL
201: NNPDLGPFLL KHARDLIASD NPRRALKYAL RATKSFEKCA GGKPSLNLVM SLHVVAAIYC NLGKYDEAVP VLQRSLEIPV IEEGQEHALA KFSGCMQLGD
301: TYGMLGQTAL SLQWYAAGLE IQKQTLGEQD PRVGETCRYL AEAHVQALQL DEAQRLCQKA LDIHRENGEP ASLEETADRR LMGLICDTKG DHEAALEHLV
401: MASMAMVANG QETEVASVDC SIGDIYLSLG RYDEAVFSYQ KALTVFKTSK GENHATVASV FVRLADLYNK TGKLRESKSY CENALKIYQK PIPGTSLEEI
501: ATGLTDVSAI YETMNEHEQA LKLLQKALKM YNNSAGQQST IAGIEAQMGV LHYILGNYGE AYDSFKSAIA KLRTCGEKKT AFFGVALNQM GLACVQRYSI
601: NEAAELFEEA RAVLEQEYGP YHPDTLGVYS NLAGTYDAMG RLDEAIEILE HVVGMREEKL GTANPDVDDE KRRLAELLKE AGRGRSRKAK SLENLLETNP
701: YTVTKRGTVA A
001: MDVGESNERV KDDSALQASP RSPLSSIDLA IDGAMNASIE QLYHNVCEME SSDDQSPSRA SFISYGAESR IDLELRHLVG DVGEEGESKK EIILEKKEES
101: NGEGSLSQKK PLSNGKKVAK TSPNNPKMPG SRISSRKSPD LGKVSVDEES PELGVVLLKQ ARELVSSGEN LNKALDLALR AVKVFEKCGE GEKQLGLNLV
201: MSLHILAAIY AGLGRYNDAV PVLERSIEIP MIEDGEDHAL AKFAGCMQLG DMYGLMGQVE NSIMLYTAGL EIQRQVLGES DARVGETCRY LAEAHVQAMQ
301: FEEASRLCQM ALDIHKENGA AATASIEEAA DRKLMGLICD AKGDYEVALE HYVLASMAMS SQNHREDVAA VDCSIGDAYM SLARFDEAIF AYQKALAVFK
401: QGKGETHSSV ALVYVRLADL YNKIGKTRDS KSYCENALKI YLKPTPGTPM EEVATGFIEI SAIYQSMNEL DQALKLLRRA LKIYANAPGQ QNTIAGIEAQ
501: MGVVTYMMGN YSESYDIFKS AISKFRNSGE KKTALFGIAL NQMGLACVQR YAINEAADLF EEAKTILEKE CGPYHPDTLA VYSNLAGTYD AMGRLDDAIE
601: ILEYVVGTRE EKLGTANPEV EDEKQRLAAL LKEAGRGRSK RNRALLTLLD NNPEIANGQR PVY
101: NGEGSLSQKK PLSNGKKVAK TSPNNPKMPG SRISSRKSPD LGKVSVDEES PELGVVLLKQ ARELVSSGEN LNKALDLALR AVKVFEKCGE GEKQLGLNLV
201: MSLHILAAIY AGLGRYNDAV PVLERSIEIP MIEDGEDHAL AKFAGCMQLG DMYGLMGQVE NSIMLYTAGL EIQRQVLGES DARVGETCRY LAEAHVQAMQ
301: FEEASRLCQM ALDIHKENGA AATASIEEAA DRKLMGLICD AKGDYEVALE HYVLASMAMS SQNHREDVAA VDCSIGDAYM SLARFDEAIF AYQKALAVFK
401: QGKGETHSSV ALVYVRLADL YNKIGKTRDS KSYCENALKI YLKPTPGTPM EEVATGFIEI SAIYQSMNEL DQALKLLRRA LKIYANAPGQ QNTIAGIEAQ
501: MGVVTYMMGN YSESYDIFKS AISKFRNSGE KKTALFGIAL NQMGLACVQR YAINEAADLF EEAKTILEKE CGPYHPDTLA VYSNLAGTYD AMGRLDDAIE
601: ILEYVVGTRE EKLGTANPEV EDEKQRLAAL LKEAGRGRSK RNRALLTLLD NNPEIANGQR PVY
Arabidopsis Description
KLCR2Protein KINESIN LIGHT CHAIN-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LII8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.