Factsheet for AT1G27500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032832.1-P	Field mustard	nucleus	82.15	82.4
CDY27619	Canola	nucleus	82.15	82.4
CDY56191	Canola	cytosol	85.02	78.93
VIT_17s0000g08260.t01	Wine grape	cytosol	63.84	57.18
PGSC0003DMT400062960	Potato	cytosol	62.48	56.58
Solyc03g114320.2.1	Tomato	cytosol	62.18	56.3
KRH63534	Soybean	nucleus	60.67	55.23
GSMUA_Achr10P...	Banana	cytosol	54.92	55.0
Os02t0708400-01	Rice	plasma membrane	56.58	52.6
EES05647	Sorghum	cytosol	56.58	52.45
KRH54405	Soybean	cytosol	59.61	52.32
HORVU6Hr1G069310.1	Barley	cytosol	55.98	52.26
TraesCS6A01G274500.1	Wheat	cytosol	55.98	52.19
TraesCS6B01G302000.1	Wheat	cytosol	55.98	52.11
Zm00001d051589_P001	Maize	cytosol	56.13	52.03
TraesCS6D01G254800.1	Wheat	cytosol	55.82	51.97
Zm00001d017793_P001	Maize	cytosol	55.52	51.47
AT3G27960.1	Thale cress	cytosol	51.13	50.98
GSMUA_Achr2P09630_001	Banana	nucleus	54.77	50.63
KRH57064	Soybean	cytosol	55.22	50.0
AT4G10840.1	Thale cress	plastid	44.93	48.77
KRH03299	Soybean	cytosol	27.53	45.61
AT2G31240.1	Thale cress	mitochondrion	20.88	22.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	EntrezGene:839641	UniProt:A0A1P8ARZ2	ProteinID:AAF99740.1	ProteinID:AEE30839.1
EMBL:AK117937	ProteinID:ANM59422.1	ArrayExpress:AT1G27500	EnsemblPlantsGene:AT1G27500	RefSeq:AT1G27500	TAIR:AT1G27500
RefSeq:AT1G27500-TAIR-G	EnsemblPlants:AT1G27500.2	EMBL:BT005939	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	RefSeq:NP_001321779.1	RefSeq:NP_174070.1	PFAM:PF13374
PFAM:PF13424	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF156	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000848E1E9	SEG:seg	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]

Coordinates

chr1:-:9551451..9553919

Molecular Weight (calculated)

72512.2 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.339

Length

661 amino acids

Sequence
(BLAST)

001: MKDSCLFEIK KMEGGSVNES HSNADQMFDT TIEELCKNLC ELQSSNQSPS RQSFGSYGDE SKIDSDLQHL ALGEMRDIDI LEDEGDEDEV AKPEEFDVKS
101: NSSNLDLEVM PRDMEKQTGK KNVTKSNVGV GGMRKKKVGG TKLQNGNEEP SSENVELARF LLNQARNLVS SGDSTHKALE LTHRAAKLFE ASAENGKPCL
201: EWIMCLHVTA AVHCKLKEYN EAIPVLQRSV EIPVVEEGEE HALAKFAGLM QLGDTYAMVG QLESSISCYT EGLNIQKKVL GENDPRVGET CRYLAEALVQ
301: ALRFDEAQQV CETALSIHRE SGLPGSIAEA ADRRLMGLIC ETKGDHENAL EHLVLASMAM AANGQESEVA FVDTSIGDSY LSLSRFDEAI CAYQKSLTAL
401: KTAKGENHPA VGSVYIRLAD LYNRTGKVRE AKSYCENALR IYESHNLEIS PEEIASGLTD ISVICESMNE VEQAITLLQK ALKIYADSPG QKIMIAGIEA
501: QMGVLYYMMG KYMESYNTFK SAISKLRATG KKQSTFFGIA LNQMGLACIQ LDAIEEAVEL FEEAKCILEQ ECGPYHPETL GLYSNLAGAY DAIGRLDDAI
601: KLLGHVVGVR EEKLGTANPV TEDEKRRLAQ LLKEAGNVTG RKAKSLKTLI DSDLTSSSAL R

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.