CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032832.1-P	Field mustard	nucleus	100.0	100.0
CDY56191	Canola	cytosol	94.84	87.78
AT1G27500.2	Thale cress	cytosol	82.4	82.15
CDX90092	Canola	cytosol, mitochondrion	12.14	64.0
VIT_17s0000g08260.t01	Wine grape	cytosol	63.13	56.37
PGSC0003DMT400062960	Potato	cytosol	61.3	55.34
CDX94243	Canola	cytosol	22.91	55.31
Solyc03g114320.2.1	Tomato	cytosol	61.15	55.21
KRH63534	Soybean	nucleus	60.55	54.96
GSMUA_Achr10P...	Banana	cytosol	54.17	54.09
KRH54405	Soybean	cytosol	60.24	52.72
Os02t0708400-01	Rice	plasma membrane	55.39	51.34
Zm00001d051589_P001	Maize	cytosol	55.54	51.33
EES05647	Sorghum	cytosol	55.54	51.33
HORVU6Hr1G069310.1	Barley	cytosol	55.08	51.27
TraesCS6A01G274500.1	Wheat	cytosol	55.08	51.2
TraesCS6B01G302000.1	Wheat	cytosol	55.08	51.13
TraesCS6D01G254800.1	Wheat	cytosol	54.93	50.99
GSMUA_Achr2P09630_001	Banana	nucleus	54.78	50.49
Zm00001d017793_P001	Maize	cytosol	54.02	49.93
CDX86457	Canola	cytosol	50.23	49.85
CDY58518	Canola	cytosol	49.47	49.62
KRH57064	Soybean	cytosol	54.78	49.45
CDY05122	Canola	plastid	45.37	49.26
CDX90788	Canola	plastid	45.22	49.17
KRH03299	Soybean	cytosol	27.01	44.61
CDY19069	Canola	mitochondrion	20.49	21.92
CDY15411	Canola	mitochondrion	20.03	21.67

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	UniProt:A0A078GQZ5	EnsemblPlants:CDY27619	ProteinID:CDY27619	ProteinID:CDY27619.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00038368001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13374	PFAM:PF13424	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF156
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002542591
SEG:seg	:	:	:	:	:

Description

BnaA09g27880DBnaA09g27880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQZ5]

Coordinates

chrLK032207:-:334863..337089

Molecular Weight (calculated)

72098.4 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.354

Length

659 amino acids

Sequence
(BLAST)

001: MEGGGGSVNE LHGDSSADIA FDSTIEELCN NLCELESSKQ SPSRHIFGSY GDDESKIDSD LQHLALGEMH DLDITKDEEG EEEKEVAKPE DSEMARPPSA
101: ATKSTSSKLD TEKQVGKKNA NIPSSGLSNG TRKKKTGTAK SLNGNEEPSS ENVELARFLL NQARNLVSSG ENINKALELT LRANKLFEAS ANNGKPCLEW
201: IMCFHVTAAI HCRLKEYNEA IPLLERSIEI PVLEEGEEHA LAKFAGLMQL GDTYAMVEQL ENSISCYTEG LKIQTKVLGD NDPRVGETCR YLAEALVQAL
301: RFDEAEKVCQ TALSIHRENG LPASLAEAAD RRLMGLICET KGDHENALEH LVLASMAMAA NGQESEVAFV DSSIGDSYLS LSRFDEAICA YQKSLTALKT
401: SKGENHPAVG SIYIRLADLY NRTGKVREAK SYCDNALRIY ESHSLEISPE EIASGLTDIS VIYESMNEVE QAVTLLQKVL KIYTDSPGHK MMIVGIEAQM
501: GVLYYMMGKY LDSYNTFKKA VSKLRATGKK QSTFFGIALN QMGLACVQLD AIEEAVELFE EAKCILEQEC GPYHPETLGL YNNLAGAYDA IGRLDDAIEL
601: LGHVVGAREE NLGTANPGTE EGKRRLVQLL KEAGKVTGRK AKSLQTLIDS DLMTFSALR

Best Arabidopsis Sequence Match ( AT1G27500.1 )
(BLAST)

001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.