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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 4
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX94243 Canola cytosol 40.8 18.68
CDY27619 Canola nucleus 64.0 12.14
CDY56191 Canola cytosol 64.0 11.24
KRH03299 Soybean cytosol 35.2 11.03
CDX90788 Canola plastid 49.6 10.23
CDY05122 Canola plastid 49.6 10.21
GSMUA_Achr10P... Banana cytosol 53.6 10.15
CDX86457 Canola cytosol 52.8 9.94
CDY58518 Canola cytosol 52.0 9.89
HORVU6Hr1G069310.1 Barley cytosol 54.4 9.6
TraesCS6A01G274500.1 Wheat cytosol 54.4 9.59
TraesCS6B01G302000.1 Wheat cytosol 54.4 9.58
TraesCS6D01G254800.1 Wheat cytosol 54.4 9.58
Os02t0708400-01 Rice plasma membrane 54.4 9.56
Zm00001d017793_P001 Maize cytosol 54.4 9.54
EES05647 Sorghum cytosol 54.4 9.54
Zm00001d051589_P001 Maize cytosol 54.4 9.54
VIT_17s0000g08260.t01 Wine grape cytosol 54.4 9.21
PGSC0003DMT400062960 Potato cytosol 53.6 9.18
Solyc03g114320.2.1 Tomato cytosol 53.6 9.18
KRH63534 Soybean nucleus 52.8 9.09
KRH57064 Soybean cytosol 52.8 9.04
GSMUA_Achr2P09630_001 Banana nucleus 50.4 8.81
KRH54405 Soybean cytosol 52.0 8.63
CDY15411 Canola mitochondrion 20.0 4.11
CDY19069 Canola mitochondrion 20.0 4.06
Protein Annotations
EnsemblPlants:CDX90092EnsemblPlantsGene:GSBRNA2T00150608001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR011990InterPro:TPR-like_helical_dom_sfPANTHER:PTHR19959PANTHER:PTHR19959:SF156PFAM:PF13374PFscan:PS51257
ProteinID:CDX90092ProteinID:CDX90092.1SEG:segSUPFAM:SSF48452UniParc:UPI0004EE5EFAMapMan:35.1
Description
BnaA08g18920D
Coordinates
chrLK031862:-:25340..25848
Molecular Weight (calculated)
13669.3 Da
IEP (calculated)
4.270
GRAVY (calculated)
-0.121
Length
125 amino acids
Sequence
(BLAST)
001: MTAQYQRAWQ HQRGGRKMFL GIALNQMGLA CVQIDEIEEG VELSEEAKCV LEQECGIYHA ETLGVYNNLA GAYDAIGRLE DAIVLVGHVV GAREEKLGTA
101: NLDTEEEKGR LTLIDSDLLT SSALC
Best Arabidopsis Sequence Match ( AT1G27500.1 )
(BLAST)
001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.