CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27619	Canola	nucleus	87.78	94.84
AT1G27500.2	Thale cress	cytosol	78.93	85.02
CDX90092	Canola	cytosol, mitochondrion	11.24	64.0
VIT_17s0000g08260.t01	Wine grape	cytosol	59.27	57.18
KRH63534	Soybean	nucleus	57.58	56.47
Solyc03g114320.2.1	Tomato	cytosol	57.87	56.44
PGSC0003DMT400062960	Potato	cytosol	57.87	56.44
CDX94243	Canola	cytosol	21.21	55.31
GSMUA_Achr10P...	Banana	cytosol	51.26	55.3
KRH54405	Soybean	cytosol	56.74	53.65
Zm00001d051589_P001	Maize	cytosol	52.95	52.88
EES05647	Sorghum	cytosol	52.81	52.73
Os02t0708400-01	Rice	plasma membrane	52.11	52.18
HORVU6Hr1G069310.1	Barley	cytosol	51.54	51.84
TraesCS6A01G274500.1	Wheat	cytosol	51.54	51.76
TraesCS6B01G302000.1	Wheat	cytosol	51.4	51.55
Zm00001d017793_P001	Maize	cytosol	51.54	51.47
TraesCS6D01G254800.1	Wheat	cytosol	51.26	51.41
GSMUA_Achr2P09630_001	Banana	nucleus	51.54	51.33
KRH57064	Soybean	cytosol	51.97	50.68
CDX86457	Canola	cytosol	47.19	50.6
CDY58518	Canola	cytosol	46.63	50.53
CDY05122	Canola	plastid	42.7	50.08
CDX90788	Canola	plastid	42.56	50.0
KRH03299	Soybean	cytosol	25.7	45.86
CDY19069	Canola	mitochondrion	19.38	22.4
CDY15411	Canola	mitochondrion	18.96	22.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	UniProt:A0A078J244	EnsemblPlants:CDY56191	ProteinID:CDY56191	ProteinID:CDY56191.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00017963001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13424	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF156	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE784D	SEG:seg

Description

BnaC05g51100DBnaC05g51100D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078J244]

Coordinates

chrLK033467:-:54691..57294

Molecular Weight (calculated)

78171.3 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.405

Length

712 amino acids

Sequence
(BLAST)

001: EKVEISTLST YFWRAYRFYK HPSSPPNFHF LYSCLLPRNP VPTQTQNREE EIMEGGGGGS ANELNGDSSA DIAFDTTIEE LCNNLCELQS SNQSPSRHSF
101: GSYGDDESKI DSDLQHLALG EVHDLDITED EEGEGEKEVA KPEDFDMARP PSAATKSTSS KLDTEKQVGK KNPNRPSSGL GNGARKKKAG TAKSQNGNEE
201: PSSENVELAR FLLNQARNLV SSGENINKAL ELTLRADKLF EASANNGKPC LEWIMCFHVT AAIHCRLKEY NEAIPLLERS IEIPVLEEGE EHALAKFAGL
301: MQLGDTYAMV GQLENSISCY TEGLKIQTKV LGDNDPRVGE TCRYLAEALV QALRFDEAEN VCQTALSIHR ENGLPASLAE AADRRLMGLI CETKGDHENA
401: LEHLVLASMA MAANGQESEV AFVDSSIGDS YLSLSRFDEA ICAYQKSLTA LKTAKGENHP AVGSVYIRLA DLYNRTGKVR EAKSYCDNAL RIYESHSLEI
501: SPEEIASGLT DISVICESMN EVEQAVTLLQ KALKIYTDSP GQKMMIAGIE AQMGVLYYMM GKYLESYNTF KRAVSKLRAT GKKQSTFFGI ALNQMGLACV
601: QLDAIEEAVE LFEEAKCILE QECGPYHPET LGLYNNLAGA YDAIGRLDDA IELLGHVVGV REEKLGTANP GTEEEKRRLV QLLKEAGKVT GRKAKSLQTL
701: IDSDLMTSSA LR

Best Arabidopsis Sequence Match ( AT1G27500.2 )
(BLAST)

001: MKDSCLFEIK KMEGGSVNES HSNADQMFDT TIEELCKNLC ELQSSNQSPS RQSFGSYGDE SKIDSDLQHL ALGEMRDIDI LEDEGDEDEV AKPEEFDVKS
101: NSSNLDLEVM PRDMEKQTGK KNVTKSNVGV GGMRKKKVGG TKLQNGNEEP SSENVELARF LLNQARNLVS SGDSTHKALE LTHRAAKLFE ASAENGKPCL
201: EWIMCLHVTA AVHCKLKEYN EAIPVLQRSV EIPVVEEGEE HALAKFAGLM QLGDTYAMVG QLESSISCYT EGLNIQKKVL GENDPRVGET CRYLAEALVQ
301: ALRFDEAQQV CETALSIHRE SGLPGSIAEA ADRRLMGLIC ETKGDHENAL EHLVLASMAM AANGQESEVA FVDTSIGDSY LSLSRFDEAI CAYQKSLTAL
401: KTAKGENHPA VGSVYIRLAD LYNRTGKVRE AKSYCENALR IYESHNLEIS PEEIASGLTD ISVICESMNE VEQAITLLQK ALKIYADSPG QKIMIAGIEA
501: QMGVLYYMMG KYMESYNTFK SAISKLRATG KKQSTFFGIA LNQMGLACIQ LDAIEEAVEL FEEAKCILEQ ECGPYHPETL GLYSNLAGAY DAIGRLDDAI
601: KLLGHVVGVR EEKLGTANPV TEDEKRRLAQ LLKEAGNVTG RKAKSLKTLI DSDLTSSSAL R

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.