CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90092	Canola	cytosol, mitochondrion	11.03	35.2
KRH57064	Soybean	cytosol	62.66	34.25
KRH60081	Soybean	nucleus	45.36	32.15
KRH41360	Soybean	nucleus	45.61	31.49
KRH06445	Soybean	cytosol	43.11	31.05
KRH63534	Soybean	nucleus	52.13	28.65
GSMUA_Achr10P...	Banana	cytosol	47.12	28.48
AT1G27500.2	Thale cress	cytosol	45.61	27.53
VIT_17s0000g08260.t01	Wine grape	cytosol	50.63	27.37
KRH54405	Soybean	cytosol	51.63	27.36
Zm00001d051589_P001	Maize	cytosol	48.37	27.07
EES05647	Sorghum	cytosol	48.37	27.07
Bra032832.1-P	Field mustard	nucleus	44.61	27.01
CDY27619	Canola	nucleus	44.61	27.01
GSMUA_Achr2P09630_001	Banana	nucleus	48.12	26.85
Solyc03g114320.2.1	Tomato	cytosol	49.12	26.85
Os02t0708400-01	Rice	plasma membrane	47.62	26.72
PGSC0003DMT400062960	Potato	cytosol	48.87	26.71
Zm00001d017793_P001	Maize	cytosol	47.62	26.65
HORVU6Hr1G069310.1	Barley	cytosol	46.87	26.41
TraesCS6A01G274500.1	Wheat	cytosol	46.87	26.38
TraesCS6B01G302000.1	Wheat	cytosol	46.87	26.34
TraesCS6D01G254800.1	Wheat	cytosol	46.87	26.34
KRG93305	Soybean	cytosol	45.61	26.0
CDY56191	Canola	cytosol	45.86	25.7
KRH56614	Soybean	cytosol	43.86	24.93
KRH32172	Soybean	mitochondrion	18.8	12.2
KRH19545	Soybean	mitochondrion	18.55	12.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	UniProt:A0A0R0FJ27	EMBL:ACUP02010342	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G089900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH03299	ProteinID:KRH03299	ProteinID:KRH03299.1	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR19959	PANTHER:PTHR19959:SF156	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0006ED7C8E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:6996553..6998079

Molecular Weight (calculated)

43227.0 Da

IEP (calculated)

4.564

GRAVY (calculated)

-0.191

Length

399 amino acids

Sequence
(BLAST)

001: MDVTLSETEM FFSSPSSTST LQGETYSKEM NLMVVLPDVV MTSKNPSNMG TGSAQELSAH IGSAPQCDTT SSLAPQSPTR SPSTSIVPTN DSIVADVPEN
101: TYQLPPRSNR GKPPNGKHES ALEHLVLASM AMVANAQDVE VASVDCNIGD TNLSLARYDE AIFAYERALT VYKTHKGENH PSVGSVYVSL ADLHCRTWKV
201: RESKSYCESA LKIYENPMLG VPPEEVASGF MNVSAIYESM NELEQTLKLL HKALEILNEG SGQQNTIAGI ENYTESYNAF KNAVSKLHAT GEKKSAFFGT
301: VLNQMGLACV QLHALDEAAE LFEEARVILE QENGPCHPET LGVYGNLAGT YDAIGRYPST VLFLLLKLQA NATNVVTIAV TGEYKNLDTV VEIVVTNQL

Best Arabidopsis Sequence Match ( AT1G27500.1 )
(BLAST)

001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.