Factsheet for VIT_17s0000g08260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062960	Potato	cytosol	75.47	76.3
Solyc03g114320.2.1	Tomato	cytosol	75.2	76.03
KRH63534	Soybean	nucleus	69.51	70.66
GSMUA_Achr10P...	Banana	cytosol	62.2	69.55
VIT_14s0066g01280.t01	Wine grape	cytosol	62.74	69.1
EES05647	Sorghum	cytosol	66.12	68.44
Os02t0708400-01	Rice	plasma membrane	65.85	68.35
Zm00001d051589_P001	Maize	cytosol	65.72	68.02
KRH54405	Soybean	cytosol	69.11	67.73
HORVU6Hr1G069310.1	Barley	cytosol	64.36	67.09
TraesCS6A01G274500.1	Wheat	cytosol	64.23	66.85
TraesCS6D01G254800.1	Wheat	cytosol	64.23	66.76
TraesCS6B01G302000.1	Wheat	cytosol	64.23	66.76
Zm00001d017793_P001	Maize	cytosol	63.96	66.2
GSMUA_Achr2P09630_001	Banana	nucleus	63.14	65.17
AT1G27500.2	Thale cress	cytosol	57.18	63.84
CDY27619	Canola	nucleus	56.37	63.13
Bra032832.1-P	Field mustard	nucleus	56.37	63.13
VIT_02s0025g02090.t01	Wine grape	plastid	49.05	61.25
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	48.65	60.23
KRH57064	Soybean	cytosol	59.49	60.14
CDY56191	Canola	cytosol	57.18	59.27
CDX90092	Canola	cytosol, mitochondrion	9.21	54.4
VIT_00s1429g00010.t01	Wine grape	cytosol	10.98	54.36
KRH03299	Soybean	cytosol	27.37	50.63
VIT_07s0005g03110.t01	Wine grape	mitochondrion	19.51	22.26

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100255253	wikigene:100255253	MapMan:21.1.1.4.3	EMBL:AM435130	ProteinID:CAN64896
ProteinID:CAN64896.1	ProteinID:CCB42986	ProteinID:CCB42986.1	ncoils:Coil	UniProt:F6GSR3	EMBL:FN594950
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EntrezGene:LOC100255253	wikigene:LOC100255253	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959
PANTHER:PTHR19959:SF156	SMART:SM00028	SUPFAM:SSF48452	TIGR:TC54273	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002108935	ArrayExpress:VIT_17s0000g08260	EnsemblPlantsGene:VIT_17s0000g08260	EnsemblPlants:VIT_17s0000g08260.t01	RefSeq:XP_002279663
RefSeq:XP_002279663.2	RefSeq:XP_010663184.1	RefSeq:XP_010663185.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:9346519..9349115

Molecular Weight (calculated)

80512.8 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.514

Length

738 amino acids

Sequence
(BLAST)

001: MPGVVMEGVN EDGVANELNG SSTAFKENSA SNKSPKSNLG LQSPPRSAGV EFPMNGVIDT SIEQLYDNVC EMQSSDQSPS RVSFGSEGEE SRIDSELRHL
101: VGGEMREVEI MEEEVEKPGD NSRSDSGSKK ESLSAGKQFG KMDKSELSSK SVSPVHSKKN SQLESEVSSK SNPKSRSPQG KPPSDKRSEK NLRNPNAGVT
201: PLKKQRNSPL GGVKLQNGTD DSSEAGLDNP NLGRFLLKQA RDLISSGDNP QKALELALRA TKSYEKCANG KPSLEQVMCL HVTAAIYCNL GQYNEAIPVL
301: EHSIEIPVIE EGQDHALAKF AGHMQLGDTY AMVGQLENSI LCYTTGLGVQ KQVLGDTDPR VGETCRYLAE AHVQALQFDE AEKLCQMALD IHRENGSPAS
401: LEEAADRRLM GLICEMKGDH EAALEHLILA SMAMVANGQE IEVASVDCSI GDTYLSLSRY DEAIFAYQKA LTVFKTTKGE NHPSVASVFV RLADLYNKTG
501: KLRESKSYCE NALRIYGKPI PGIPPEEIAS GLTDVSAIYE SMDELEQALS LLQKALKIYN DAPGQQSTTA GIEAQMGVMY YMLGNYSDSY NSFKNAISKL
601: RASGEKKSAF FGIALNQMGL ACVQRYAINE AAELFEEARD ILEQEYGPYH PDTLGVYSNL AGTYDAVGRL DDAIEILEHV VGMREEKLGT ANPDVDDEKR
701: RLAELLKEAG KVRNRKARSL ETLLDVNSQT VNNDDIKV

Best Arabidopsis Sequence Match ( AT1G27500.2 )
(BLAST)

001: MKDSCLFEIK KMEGGSVNES HSNADQMFDT TIEELCKNLC ELQSSNQSPS RQSFGSYGDE SKIDSDLQHL ALGEMRDIDI LEDEGDEDEV AKPEEFDVKS
101: NSSNLDLEVM PRDMEKQTGK KNVTKSNVGV GGMRKKKVGG TKLQNGNEEP SSENVELARF LLNQARNLVS SGDSTHKALE LTHRAAKLFE ASAENGKPCL
201: EWIMCLHVTA AVHCKLKEYN EAIPVLQRSV EIPVVEEGEE HALAKFAGLM QLGDTYAMVG QLESSISCYT EGLNIQKKVL GENDPRVGET CRYLAEALVQ
301: ALRFDEAQQV CETALSIHRE SGLPGSIAEA ADRRLMGLIC ETKGDHENAL EHLVLASMAM AANGQESEVA FVDTSIGDSY LSLSRFDEAI CAYQKSLTAL
401: KTAKGENHPA VGSVYIRLAD LYNRTGKVRE AKSYCENALR IYESHNLEIS PEEIASGLTD ISVICESMNE VEQAITLLQK ALKIYADSPG QKIMIAGIEA
501: QMGVLYYMMG KYMESYNTFK SAISKLRATG KKQSTFFGIA LNQMGLACIQ LDAIEEAVEL FEEAKCILEQ ECGPYHPETL GLYSNLAGAY DAIGRLDDAI
601: KLLGHVVGVR EEKLGTANPV TEDEKRRLAQ LLKEAGNVTG RKAKSLKTLI DSDLTSSSAL R

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.