Factsheet for VIT_07s0005g03110.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021713.1-P	Field mustard	cytosol	55.49	69.98
KRH19545	Soybean	mitochondrion	66.62	69.97
KRH32172	Soybean	mitochondrion	65.07	68.46
AT2G31240.1	Thale cress	mitochondrion	60.28	63.21
Solyc09g066290.2.1	Tomato	plastid	62.6	62.69
CDY15411	Canola	mitochondrion	58.11	61.74
CDY19069	Canola	mitochondrion	57.81	60.71
GSMUA_Achr9P23570_001	Banana	mitochondrion	57.34	56.9
TraesCS6B01G437800.1	Wheat	mitochondrion	49.61	52.03
EES07769	Sorghum	mitochondrion	49.46	51.95
PGSC0003DMT400025136	Potato	plastid	62.75	51.85
Zm00001d051893_P001	Maize	mitochondrion	49.15	51.71
TraesCS6A01G398000.1	Wheat	mitochondrion	49.15	51.54
Os02t0820300-01	Rice	mitochondrion	49.46	51.53
HORVU6Hr1G091620.4	Barley	mitochondrion	44.98	50.61
TraesCS6D01G382300.1	Wheat	mitochondrion	47.45	49.6
GSMUA_Achr5P17290_001	Banana	plastid	36.63	47.4
Os03t0149400-01	Rice	mitochondrion	32.15	41.77
TraesCS4A01G415700.1	Wheat	mitochondrion	36.01	41.76
EER95495	Sorghum	mitochondrion	36.63	41.43
TraesCS4D01G313100.1	Wheat	mitochondrion	35.24	41.01
Zm00001d027683_P001	Maize	mitochondrion	35.09	39.27
TraesCS4B01G316500.2	Wheat	mitochondrion	35.55	32.44
VIT_02s0025g02090.t01	Wine grape	plastid	22.87	25.04
VIT_00s1429g00010.t01	Wine grape	cytosol	5.72	24.83
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	21.33	23.15
VIT_14s0066g01280.t01	Wine grape	cytosol	22.41	21.64
VIT_17s0000g08260.t01	Wine grape	cytosol	22.26	19.51

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100247992	wikigene:100247992	MapMan:35.1	ProteinID:CCB60096	ProteinID:CCB60096.1
ncoils:Coil	UniProt:F6HZI1	EMBL:FN596502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100247992	wikigene:LOC100247992	PFAM:PF13374
PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF168	SMART:SM00028
SUPFAM:SSF48452	TIGR:TC52793	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015CD0CB
ArrayExpress:VIT_07s0005g03110	EnsemblPlantsGene:VIT_07s0005g03110	EnsemblPlants:VIT_07s0005g03110.t01	unigene:Vvi.17069	RefSeq:XP_002263867	RefSeq:XP_002263867.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:5933344..5940230

Molecular Weight (calculated)

71819.9 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.389

Length

647 amino acids

Sequence
(BLAST)

001: MRRASSKLVS HLSYYRNLTP LLSRNYIPEL SPSISANDHV SSLSSSSSNH IRPCKKASGL LLSKAKSDPF QTNSSRNLNT QSETPPQISS RQRKIKERSQ
101: LEETFESATS TESMLKAFQE MESSFDEKEL GLASLKLGLK MDQEGEDPEK TLAFANRALK ALDKNDKPSL LVAMALQLMG SANYSLKRFN DSLGYLNRAN
201: RVLGRLEEEG SCSVDDIRPV LHAVQLELAN VKTAVGRREE ALVNLTKCLE IKEMTLEKDS KELGAAYRDL AEAHTAVLNF KEALPFCLKA LEIHKKQLGH
301: NSVEVAHDRR LLGVVYTGLE EHQKALEQNE LSQKVLKNWG LSSELLRAEI DAANMQIALG KYDEAINTLK GVVQRTDKES ENRALVFISM AKALCNQEKF
401: ADSKRCLEIA CGVLDKREMV SPVEVAEAYM EISMQYETMN EFETAISLLK RTLAMLEKLP QEQHSEGSVS ARIGWLLLLT GKVAQAIPYL ESAAERLKES
501: FGSKHFGVGY IYNNLGAAYL ELDRPQSAAQ MFAVAKDIMD VSLGPHHADS IEACQNLSKA YGAMGSYVLA IEFQQRVIDA WEGHGPSAYE ELREAQRILT
601: ELKKKARGAT SNELITKALP LPHSTGSAPT RNLPSDVPVD EKRSNVI

Best Arabidopsis Sequence Match ( AT2G31240.1 )
(BLAST)

001: MKSLSISLIR RLHFHKIRPI PLSIHLNAAS SSSSSSSLIS PAREISTSCR RTNDLIKRQF WVNPYRNLNT HVEEPPEISS SDKEKIDLEE AFESANTTDE
101: MVRLFKEMEL SFEGNELGLS ALKLGLHLDR EGEDPEKVLS YADKALKSFD GDGNKPNLLV AMASQLMGSA NYGLKRFSDS LGYLNRANRI LVKLEADGDC
201: VVEDVRPVLH AVQLELANVK NAMGRREEAI ENLKKSLEIK EMTFDEDSKE MGVANRSLAD AYVAVLNFNE ALPYALKALE IHKKELGNNS AEVAQDRRLL
301: GVIYSGLEQH DKALEQNRLS QRVLKNWGMK LELIRAEIDA ANMKVALGKY EEAIDILKSV VQQTDKDSEM RAMVFISMSK ALVNQQKFAE SKRCLEFACE
401: ILEKKETALP VEVAEAYSEV AMQYESMNEF ETAISLLQKT LGILEKLPQE QHSEGSVSAR IGWLLLFSGR VSQAVPYLES AAERLKESFG AKHFGVGYVY
501: NNLGAAYLEL GRPQSAAQMF AVAKDIMDVS LGPNHVDSID ACQNLSKAYA GMGNYSLAVE FQQRVINAWD NHGDSAKDEM KEAKRLLEDL RLKARGGVST
601: NKLLNKALPL PKPSHSS

Arabidopsis Description

Putative kinesin light chain [Source:UniProtKB/TrEMBL;Acc:Q8VZQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.