Factsheet for Zm00001d051893_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07769	Sorghum	mitochondrion	92.03	91.88
Os02t0820300-01	Rice	mitochondrion	78.05	77.29
TraesCS6B01G437800.1	Wheat	mitochondrion	74.47	74.23
TraesCS6A01G398000.1	Wheat	mitochondrion	73.98	73.74
HORVU6Hr1G091620.4	Barley	mitochondrion	66.99	71.65
TraesCS6D01G382300.1	Wheat	mitochondrion	71.38	70.92
Bra021713.1-P	Field mustard	cytosol	45.37	54.39
GSMUA_Achr9P23570_001	Banana	mitochondrion	56.59	53.37
KRH32172	Soybean	mitochondrion	50.08	50.08
KRH19545	Soybean	mitochondrion	49.76	49.68
VIT_07s0005g03110.t01	Wine grape	mitochondrion	51.71	49.15
AT2G31240.1	Thale cress	mitochondrion	47.97	47.81
CDY15411	Canola	mitochondrion	46.99	47.45
CDY19069	Canola	mitochondrion	46.99	46.92
Solyc09g066290.2.1	Tomato	plastid	48.13	45.82
Zm00001d027683_P001	Maize	mitochondrion	38.05	40.48
PGSC0003DMT400025136	Potato	plastid	48.62	38.19
Zm00001d054069_P001	Maize	plasma membrane	21.95	22.73
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	21.79	21.9
Zm00001d017793_P001	Maize	cytosol	23.74	20.48
Zm00001d051589_P001	Maize	cytosol	22.76	19.64

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100383987	MapMan:35.1	ProteinID:AQK55398.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K7UZU3
PFAM:PF13374	PFAM:PF13424	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF168	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000220ADF9	EnsemblPlantsGene:Zm00001d051893
EnsemblPlants:Zm00001d051893_P001	EnsemblPlants:Zm00001d051893_T001	SEG:seg	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr4:+:173860945..173865144

Molecular Weight (calculated)

66624.0 Da

IEP (calculated)

6.680

GRAVY (calculated)

-0.139

Length

615 amino acids

Sequence
(BLAST)

001: MALRRVASVL LRTRLRGPVT SPARKALVHP LQAPPRRQFS PRPPPPVPFA AAAAADAAEE AFEAARSTND MLAAFSRLEA TVPANDKRLA LACLKLGQHL
101: EASGSADTSR VLALALRCLG ILEASPNAST PSSASDAVSL AMALHLAGSA SFDLSRFHDA LSFLSRALRL LAPLLPETGV AFEVGEEPGG FDVRPVAHAV
201: RLQLANVKTA LGRREEALAD MRACLDLKES ILPPGSRELG VAYRDLAEAH ATLLDFKQAL PFCQKALELH ESTLGKNSVE VAHDRRLLGV IYTGLEQHEQ
301: ALEQNEISQR VIKSWGAASP DLLLHAEIDA ANINIALGKF DEAVSVLKNV AKQVKKDSET RALVFISMAK ALANQEKAGD TKRCLEIACD ILEKKKFATP
401: DKVAEMYIEV SSLFETVNEL EKAISLLKKS LGMLERMPQA QHLEGNVAAR IGWLLLLTGK VSEAVPYLED AVERMKDSFG PKHYGVGYVY NNLGAAYMEM
501: DRPQSAAQMF ALAKEVMDVS LGPHHSDTIE ACQSLANAYN AMGSYPLAME FQKRVIDSWR NHGADARDEL KEAMRLYNQI KAKALACLSP GGSANALPES
601: QEQETDSDTA KAAQR

Best Arabidopsis Sequence Match ( AT2G31240.1 )
(BLAST)

001: MKSLSISLIR RLHFHKIRPI PLSIHLNAAS SSSSSSSLIS PAREISTSCR RTNDLIKRQF WVNPYRNLNT HVEEPPEISS SDKEKIDLEE AFESANTTDE
101: MVRLFKEMEL SFEGNELGLS ALKLGLHLDR EGEDPEKVLS YADKALKSFD GDGNKPNLLV AMASQLMGSA NYGLKRFSDS LGYLNRANRI LVKLEADGDC
201: VVEDVRPVLH AVQLELANVK NAMGRREEAI ENLKKSLEIK EMTFDEDSKE MGVANRSLAD AYVAVLNFNE ALPYALKALE IHKKELGNNS AEVAQDRRLL
301: GVIYSGLEQH DKALEQNRLS QRVLKNWGMK LELIRAEIDA ANMKVALGKY EEAIDILKSV VQQTDKDSEM RAMVFISMSK ALVNQQKFAE SKRCLEFACE
401: ILEKKETALP VEVAEAYSEV AMQYESMNEF ETAISLLQKT LGILEKLPQE QHSEGSVSAR IGWLLLFSGR VSQAVPYLES AAERLKESFG AKHFGVGYVY
501: NNLGAAYLEL GRPQSAAQMF AVAKDIMDVS LGPNHVDSID ACQNLSKAYA GMGNYSLAVE FQQRVINAWD NHGDSAKDEM KEAKRLLEDL RLKARGGVST
601: NKLLNKALPL PKPSHSS

Arabidopsis Description

Putative kinesin light chain [Source:UniProtKB/TrEMBL;Acc:Q8VZQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.