Factsheet for Zm00001d027683_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95495	Sorghum	mitochondrion	75.78	76.57
TraesCS4D01G313100.1	Wheat	mitochondrion	58.82	61.15
Os03t0149400-01	Rice	mitochondrion	51.56	59.84
TraesCS4A01G415700.1	Wheat	mitochondrion	56.4	58.42
TraesCS4B01G316500.2	Wheat	mitochondrion	57.79	47.11
GSMUA_Achr5P17290_001	Banana	plastid	35.64	41.2
Bra021713.1-P	Field mustard	cytosol	34.95	39.38
Zm00001d051893_P001	Maize	mitochondrion	40.48	38.05
KRH32172	Soybean	mitochondrion	40.14	37.72
KRH19545	Soybean	mitochondrion	39.27	36.85
VIT_07s0005g03110.t01	Wine grape	mitochondrion	39.27	35.09
AT2G31240.1	Thale cress	mitochondrion	36.68	34.36
CDY15411	Canola	mitochondrion	35.64	33.83
CDY19069	Canola	mitochondrion	35.81	33.6
Solyc09g066290.2.1	Tomato	plastid	36.68	32.82
PGSC0003DMT400025136	Potato	plastid	37.54	27.71
Zm00001d054069_P001	Maize	plasma membrane	21.8	21.21
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	21.28	20.1
Zm00001d017793_P001	Maize	cytosol	20.76	16.83
Zm00001d051589_P001	Maize	cytosol	20.24	16.41

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100274432	MapMan:35.1	UniProt:B4G0Z0	EMBL:BT043028	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
ProteinID:ONL93683.1	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF168
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00017B7A4F
EnsemblPlantsGene:Zm00001d027683	EnsemblPlants:Zm00001d027683_P001	EnsemblPlants:Zm00001d027683_T001	SEG:seg	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:+:11126731..11130713

Molecular Weight (calculated)

63210.1 Da

IEP (calculated)

6.091

GRAVY (calculated)

-0.141

Length

578 amino acids

Sequence
(BLAST)

001: MRRLAKSLLL ASLSRTLRHR PQLPLLHPWP PQPRRPEPRL LPFSTQTLAP GPAPPPALVA ASTGEPTGLA LLESAELHES EGDHQEALGL ALKALAPLQA
101: SHGGWSLPVA RALRLAGAAA TRAGSLSDGL ESLGAAADIV DYLAPARRKG VPAEVAVVGA AVYEQLARAK MAIGRRWDAV GDLQRALDLK TLFLEAGSAE
201: LGNAYRDVAE AYAGVLDFDK ALPLCSKALG IAERRFGEDS AEVAKLRRLL MSVYTGLGRH EEALAQIELA KVVYERLGLN VELSQAEIDG ANIRILLGRS
301: EEALNNIKRV MQRADKESEE RALAYVTMAK ILMSEDTVLD SKRCLEIAQG IIDAKDSIDP GRFAEAYAEI SMLYESLANF ETSSGSFEMA SNLMKKTLAI
401: LESAKEMHHI EGSISARLGW LLLYIKNVDE SVQYLERAVD KLKNCFGPRH FGLGFAYRNL GQAYLEMNQH QSAVEFFKLA LDIIEATFGP LHDDTIDTKQ
501: CIANAYGLMK SYKLAMEFQE QVMDAYSRCG HGALDDFKEA ERLLEQIKMK AQGLRHAVFP ANSLPDSALA LAQRNKDD

Best Arabidopsis Sequence Match ( AT2G31240.1 )
(BLAST)

001: MKSLSISLIR RLHFHKIRPI PLSIHLNAAS SSSSSSSLIS PAREISTSCR RTNDLIKRQF WVNPYRNLNT HVEEPPEISS SDKEKIDLEE AFESANTTDE
101: MVRLFKEMEL SFEGNELGLS ALKLGLHLDR EGEDPEKVLS YADKALKSFD GDGNKPNLLV AMASQLMGSA NYGLKRFSDS LGYLNRANRI LVKLEADGDC
201: VVEDVRPVLH AVQLELANVK NAMGRREEAI ENLKKSLEIK EMTFDEDSKE MGVANRSLAD AYVAVLNFNE ALPYALKALE IHKKELGNNS AEVAQDRRLL
301: GVIYSGLEQH DKALEQNRLS QRVLKNWGMK LELIRAEIDA ANMKVALGKY EEAIDILKSV VQQTDKDSEM RAMVFISMSK ALVNQQKFAE SKRCLEFACE
401: ILEKKETALP VEVAEAYSEV AMQYESMNEF ETAISLLQKT LGILEKLPQE QHSEGSVSAR IGWLLLFSGR VSQAVPYLES AAERLKESFG AKHFGVGYVY
501: NNLGAAYLEL GRPQSAAQMF AVAKDIMDVS LGPNHVDSID ACQNLSKAYA GMGNYSLAVE FQQRVINAWD NHGDSAKDEM KEAKRLLEDL RLKARGGVST
601: NKLLNKALPL PKPSHSS

Arabidopsis Description

Putative kinesin light chain [Source:UniProtKB/TrEMBL;Acc:Q8VZQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.