Factsheet for GSMUA_Achr5P17290_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0149400-01	Rice	mitochondrion	39.8	39.96
Bra021713.1-P	Field mustard	cytosol	39.6	38.6
EER95495	Sorghum	mitochondrion	42.6	37.24
TraesCS4A01G415700.1	Wheat	mitochondrion	41.2	36.92
KRH32172	Soybean	mitochondrion	45.4	36.91
VIT_07s0005g03110.t01	Wine grape	mitochondrion	47.4	36.63
KRH19545	Soybean	mitochondrion	45.0	36.53
GSMUA_Achr9P23570_001	Banana	mitochondrion	47.6	36.5
Zm00001d027683_P001	Maize	mitochondrion	41.2	35.64
TraesCS4D01G313100.1	Wheat	mitochondrion	39.6	35.61
Solyc09g066290.2.1	Tomato	plastid	45.0	34.83
AT2G31240.1	Thale cress	mitochondrion	42.2	34.2
CDY19069	Canola	mitochondrion	41.6	33.77
CDY15411	Canola	mitochondrion	41.0	33.66
PGSC0003DMT400025136	Potato	plastid	46.6	29.76
TraesCS4B01G316500.2	Wheat	mitochondrion	40.6	28.63
GSMUA_Achr10P...	Banana	cytosol	24.2	18.33
GSMUA_Achr10P...	Banana	cytosol	20.6	17.64
GSMUA_Achr2P09630_001	Banana	nucleus	23.2	16.22

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr5G17290_001
EnsemblPlants:GSMUA_Achr5P17290_001	EnsemblPlants:GSMUA_Achr5T17290_001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M0SZA8
PFAM:PF13181	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF168
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002962599
SEG:seg	:	:	:	:	:

Description

tetratricopeptide repeat containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G17290_001]

Coordinates

chr5:-:16759436..16768797

Molecular Weight (calculated)

55438.9 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.069

Length

500 amino acids

Sequence
(BLAST)

001: MAVRRAAAAA STSLISSSSR SNLFSTALLT SLLPHLSPQT PSPTSPLPRP FRIPLPPKCP LFRRIQTLPQ IPPPPHPTPT LQSAATSAEV IAVIEAMDSS
101: LDEHDERLGA ACFEAAERLD SIGHQDLDRA LAFAFRALQF FERKDGGWSV SVAKTAMGRR REALINLRKS LDLKRSILEH TSREMGAAYK DLAEAYVVVL
201: DFDEALPLAL RALEIYGEQF GEYSAEVVQI RRLLGVIYTG LGENDEALEQ NELSRRVLES LSLDEELLQV GIDAANILIE LGRLDQAISY LKWVIQKTDK
301: ECETRASVLI SMAQALCNQE KFGDSRRCLE IASGILDKKE LVSPTKVSEA YAEISLIYET MNDFEIALSL MKKALAILQE LPQVQHLEGS ISMRIGWLLL
401: LTKRVPQSIP YLESAAEKLK DCFGPKHFGL GFVYKHLGQA YLDMDHPQSA AKVLVLAKDI IDESFGLQHE DAIDTCQCLA NAYGAMGRYV MLLQWRSNNA

Best Arabidopsis Sequence Match ( AT2G31240.1 )
(BLAST)

001: MKSLSISLIR RLHFHKIRPI PLSIHLNAAS SSSSSSSLIS PAREISTSCR RTNDLIKRQF WVNPYRNLNT HVEEPPEISS SDKEKIDLEE AFESANTTDE
101: MVRLFKEMEL SFEGNELGLS ALKLGLHLDR EGEDPEKVLS YADKALKSFD GDGNKPNLLV AMASQLMGSA NYGLKRFSDS LGYLNRANRI LVKLEADGDC
201: VVEDVRPVLH AVQLELANVK NAMGRREEAI ENLKKSLEIK EMTFDEDSKE MGVANRSLAD AYVAVLNFNE ALPYALKALE IHKKELGNNS AEVAQDRRLL
301: GVIYSGLEQH DKALEQNRLS QRVLKNWGMK LELIRAEIDA ANMKVALGKY EEAIDILKSV VQQTDKDSEM RAMVFISMSK ALVNQQKFAE SKRCLEFACE
401: ILEKKETALP VEVAEAYSEV AMQYESMNEF ETAISLLQKT LGILEKLPQE QHSEGSVSAR IGWLLLFSGR VSQAVPYLES AAERLKESFG AKHFGVGYVY
501: NNLGAAYLEL GRPQSAAQMF AVAKDIMDVS LGPNHVDSID ACQNLSKAYA GMGNYSLAVE FQQRVINAWD NHGDSAKDEM KEAKRLLEDL RLKARGGVST
601: NKLLNKALPL PKPSHSS

Arabidopsis Description

Putative kinesin light chain [Source:UniProtKB/TrEMBL;Acc:Q8VZQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.