Factsheet for GSMUA_Achr10P15110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P04520_001
GSMUA_Achr3P05620_001
GSMUA_Achr3P17820_001
GSMUA_Achr6P08230_001
GSMUA_Achr7P18240_001
GSMUA_Achr7P22680_001
GSMUA_Achr9P13870_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	GSMUA_Achr10P...	AT3G15000.1	21798944
AT4G10840.1	GSMUA_Achr6P08230_001	AT3G15000.1	21798944
AT4G10840.1	GSMUA_AchrUn_...	AT3G15000.1	21798944
AT4G10840.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT4G10840.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT4G10840.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT4G10840.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT4G10840.1	GSMUA_Achr10P...	AT5G03040.1	21798944
AT4G10840.1	GSMUA_Achr10P...	AT5G03040.1	21798944
AT4G10840.1	GSMUA_Achr11P...	AT5G03040.1	21798944
AT4G10840.1	GSMUA_Achr3P17820_001	AT5G03040.1	21798944
AT4G10840.1	GSMUA_Achr7P18240_001	AT5G03040.1	21798944
AT4G10840.1	GSMUA_Achr7P22680_001	AT5G03040.1	21798944
AT4G10840.1	GSMUA_AchrUn_...	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g008460.2.1	Tomato	cytosol, nucleus	54.45	79.9
TraesCS6D01G030400.1	Wheat	cytosol	62.33	73.68
HORVU6Hr1G004990.1	Barley	cytosol	65.07	71.83
KRH60081	Soybean	nucleus	68.15	70.69
VIT_02s0025g02090.t01	Wine grape	plastid	70.38	69.54
KRH41360	Soybean	nucleus	68.15	68.86
CDX94243	Canola	cytosol	32.02	68.5
PGSC0003DMT400031631	Potato	plastid	70.38	68.39
Zm00001d054069_P001	Maize	plasma membrane	69.18	68.01
Os02t0109800-01	Rice	plasma membrane	69.69	67.95
PGSC0003DMT400014982	Potato	plastid	70.21	67.77
KRH06445	Soybean	cytosol	64.21	67.69
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	68.66	67.28
TraesCS6B01G037200.1	Wheat	plastid	69.35	66.5
EES06120	Sorghum	plastid	68.49	65.36
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	67.64	64.54
Bra000724.1-P	Field mustard	plastid	65.75	63.16
CDX90788	Canola	plastid	65.41	63.04
CDY05122	Canola	plastid	65.41	62.93
AT4G10840.1	Thale cress	plastid	65.07	62.4
TraesCS6A01G026600.1	Wheat	plastid	69.35	59.21
VIT_00s1429g00010.t01	Wine grape	cytosol	15.07	59.06
GSMUA_Achr10P...	Banana	cytosol	56.68	50.15
GSMUA_Achr2P09630_001	Banana	nucleus	57.71	47.13
GSMUA_Achr9P23570_001	Banana	mitochondrion	23.12	20.71
GSMUA_Achr5P17290_001	Banana	plastid	17.64	20.6

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0005886	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr10G15110_001	EnsemblPlants:GSMUA_Achr10P15110_001	EnsemblPlants:GSMUA_Achr10T15110_001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:M0RID7	PFAM:PF13374	PFAM:PF13424	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF200	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002948FDE	SEG:seg	:	:

Description

Putative Nephrocystin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G15110_001]

Coordinates

chr10:-:23189574..23195662

Molecular Weight (calculated)

63104.3 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.218

Length

584 amino acids

Sequence
(BLAST)

001: MPGLVAPPEA PPLRVDVPDD GASQIRRTAD DPDPPREPRV APGSAASAAG SALRDLPAVM DETALDNPDL GPFLLKLARG AIVSGEGPSK ALEYAIRASQ
101: SLERCGGEER RLELAMSLHV AAAIYSGLGR HEEAVAALER AVAATDPALG PDHALAAFSG YMQLGDTHAV AGRMEQSIVC YTKGLEIQIE ALGDGDPRVA
201: ETCRYLAEAH VQAMQFEEAE RLCRKTLEIH REHSPPASLE EAADRRLMAL ICEAKGDHES ALEHLVLASM ALIANGQDVD VAAVDVGIGD TYLALARFDE
301: AVFSYQKALT VFKSTKGDNH PSVAAVLVRL ADLYYKTGKL RESKSYCENA LRIYAKPVPG SSNEDIAGGM MEIAAIYEAM NEPDEALKLL QKALKLMEDA
401: PGQWSTVAGI EAQMGVMYYM VGKYGEARSS FESAVAKLRA SGERKSAFFG VLLNQMGLAC VQLFKIDEAA ALFEEARAVL EQECGTSHPD TLGVYSNLAA
501: TYDAMGRVGE AIEILEHVLK LREEKLGTAN PDVDDEKKRL AELLKEAGRS RNRKPKSLEN LLVTNSQRIR KEVTRRWSGL GFKS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.