Factsheet for GSMUA_Achr11P10770_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr2P09630_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P22680_001	Banana	cytosol	56.06	55.7
GSMUA_Achr10P...	Banana	cytosol	47.84	52.37
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	49.78	50.11
PGSC0003DMT400004433	Potato	cytosol	46.97	45.21
Solyc09g007410.2.1	Tomato	cytosol	47.19	45.13
VIT_08s0040g02360.t01	Wine grape	nucleus	46.32	44.68
Solyc10g084280.1.1	Tomato	nucleus	45.89	44.35
PGSC0003DMT400027139	Potato	cytosol	46.1	44.28
GSMUA_Achr10P...	Banana	nucleus	43.07	44.22
Solyc10g086060.1.1	Tomato	cytosol	45.02	44.16
PGSC0003DMT400045333	Potato	cytosol	45.02	44.16
GSMUA_Achr3P17820_001	Banana	cytosol	45.45	43.93
HORVU3Hr1G087500.2	Barley	cytosol	46.97	43.49
TraesCS3A01G352500.1	Wheat	cytosol	46.75	43.29
TraesCS3D01G346500.1	Wheat	cytosol	46.75	43.29
TraesCS3B01G385100.1	Wheat	cytosol	46.54	43.09
KRH19825	Soybean	cytosol	43.29	42.55
Os01t0833800-01	Rice	plasma membrane	45.89	42.4
KRH67648	Soybean	nucleus	43.72	42.35
KRH32420	Soybean	cytosol	43.07	41.98
KXG33651	Sorghum	cytosol	45.24	41.97
KRG95941	Soybean	nucleus	42.86	41.51
Zm00001d042973_P007	Maize	cytosol	45.45	41.42
CDY11238	Canola	cytosol, plastid	36.58	40.92
CDX80849	Canola	cytosol, plastid	36.58	39.67
GSMUA_Achr7P18240_001	Banana	cytosol	39.18	38.35
CDY55696	Canola	nucleus, plastid	35.71	37.76
CDY04876	Canola	nucleus, plastid	36.15	37.53
Bra028854.1-P	Field mustard	nucleus, plastid	36.15	37.53
AT5G03040.1	Thale cress	cytosol, plastid	37.23	37.31
CDY10410	Canola	cytosol, plastid	34.85	36.26
Bra009554.1-P	Field mustard	cytosol	34.85	34.18
CDX70333	Canola	cytosol	35.28	33.96
AT3G09710.2	Thale cress	nucleus	32.68	32.27
Bra034081.1-P	Field mustard	nucleus	29.65	30.86
Os05t0463300-00	Rice	plasma membrane	29.87	27.49
TraesCS1D01G287100.2	Wheat	cytosol	30.74	26.84
OQU78148	Sorghum	cytosol	32.47	26.79
CDX73992	Canola	nucleus	27.49	26.62
TraesCS1A01G288100.2	Wheat	nucleus	29.87	26.49
GSMUA_Achr1P18950_001	Banana	nucleus	25.97	26.2
HORVU1Hr1G071700.1	Barley	nucleus	29.0	26.07
Bra001299.1-P	Field mustard	nucleus	26.41	25.79
TraesCS1B01G297500.1	Wheat	cytosol	29.44	25.76
GSMUA_Achr1P16160_001	Banana	nucleus	24.89	25.67
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	25.54	25.6
GSMUA_Achr7P02870_001	Banana	mitochondrion	16.67	25.58
GSMUA_Achr6P02050_001	Banana	cytosol	8.44	25.16
CDY07937	Canola	nucleus	25.97	25.1
CDY22198	Canola	cytosol	30.09	24.87
CDY41307	Canola	cytosol	29.44	24.86
GSMUA_Achr8P32220_001	Banana	cytosol	23.38	24.71
GSMUA_Achr6P35280_001	Banana	endoplasmic reticulum	16.02	24.1
GSMUA_Achr2P20050_001	Banana	nucleus	14.72	22.97
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.6	22.46
GSMUA_Achr2P16650_001	Banana	nucleus	20.56	22.41
GSMUA_Achr10P...	Banana	cytosol	20.35	22.22
GSMUA_Achr10P...	Banana	cytosol	21.43	21.9
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	19.48	21.84
GSMUA_Achr4P31410_001	Banana	cytosol	20.78	21.82
GSMUA_Achr4P22800_001	Banana	cytosol	20.35	21.66
GSMUA_Achr5P02600_001	Banana	cytosol	20.56	21.64
GSMUA_Achr6P04930_001	Banana	cytosol	18.61	21.18
GSMUA_Achr6P14440_001	Banana	nucleus	7.79	21.05
GSMUA_Achr2P15730_001	Banana	cytosol	17.97	18.82

Protein Annotations

EnsemblPlants:GSMUA_Achr11P10770_001	EnsemblPlants:GSMUA_Achr11T10770_001	EnsemblPlantsGene:GSMUA_Achr11G10770_001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612
PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000294A334	UniProt:M0RR57	MapMan:35.1

Description

Putative Protein IQ-DOMAIN 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G10770_001]

Coordinates

chr11:-:8535925..8538582

Molecular Weight (calculated)

50884.2 Da

IEP (calculated)

11.165

GRAVY (calculated)

-0.655

Length

462 amino acids

Sequence
(BLAST)

001: MVREGQWFTA VKRALVPQCC QSDLGRSIGK SKLSDSLLSK ELEANAAQPL LSAPVEDVEL TAKEDEHSKH AYSVALASAV AAEAAVVAAQ AAAEVIRLTT
101: LTTRLTGKSR REIAATKIQA VFRGYLARRS WRALRGLLRL RRLVDKSAVK SQTTNTLQCL QTLARVQTQL HSRRNSMTDQ NQALQGHLQR KCGKQPVVKI
201: GEGWNDSAQS KEQAETKLLN KQEAAVRRER ALAYAFSHQW KSSTRSLHTQ PSNPQWGWGW LAQWMAATPN NSAMEINDRA FTNSSNCNVM AQTRKHRDTS
301: LDFTPSVAQK SSQSSSQESP ATPRSKTPST ASTKKSVSPR DGQCSVDSDP RSKPSFQPEQ RRRRHSIAGP LMTGGESLVS SPTTPSYMAL TKSARARSRF
401: HGTQSYQPET SEKGSISLVK KHLSFPAVAK SNVLSSARTR RHSWPVKIDI ASSTEVATKK RV

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.