Factsheet for GSMUA_Achr6P35280_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02050_001	Banana	cytosol	30.29	60.0
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	60.59	40.35
GSMUA_Achr1P16160_001	Banana	nucleus	54.72	37.5
GSMUA_Achr1P18950_001	Banana	nucleus	54.07	36.24
CDX96427	Canola	cytosol	19.54	24.69
GSMUA_Achr6P14440_001	Banana	nucleus	12.05	21.64
GSMUA_Achr4P22800_001	Banana	cytosol	30.29	21.43
GSMUA_Achr2P20050_001	Banana	nucleus	19.87	20.61
GSMUA_Achr4P31410_001	Banana	cytosol	29.32	20.45
GSMUA_Achr5P02600_001	Banana	cytosol	28.34	19.82
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	25.41	18.93
GSMUA_Achr10P...	Banana	nucleus	27.36	18.67
GSMUA_Achr2P16650_001	Banana	nucleus	25.73	18.63
GSMUA_Achr7P22680_001	Banana	cytosol	28.01	18.49
GSMUA_Achr10P...	Banana	cytosol	25.41	18.44
GSMUA_Achr3P17820_001	Banana	cytosol	27.36	17.57
GSMUA_Achr6P04930_001	Banana	cytosol	23.13	17.49
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	25.73	17.21
GSMUA_Achr10P...	Banana	cytosol	24.43	16.59
GSMUA_Achr2P15730_001	Banana	cytosol	23.78	16.55
GSMUA_Achr10P...	Banana	cytosol	22.48	16.35
GSMUA_Achr7P18240_001	Banana	cytosol	24.76	16.1
GSMUA_Achr11P...	Banana	mitochondrion	24.1	16.02
GSMUA_Achr7P02870_001	Banana	mitochondrion	14.33	14.62
GSMUA_Achr8P32220_001	Banana	cytosol	20.2	14.19
CDX72934	Canola	nucleus, plastid	1.3	3.92
CDX96426	Canola	nucleus, plastid	1.3	3.92

Protein Annotations

EnsemblPlants:GSMUA_Achr6P35280_001	EnsemblPlants:GSMUA_Achr6T35280_001	EnsemblPlantsGene:GSMUA_Achr6G35280_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	PFAM:PF00612	PFscan:PS50096
SEG:seg	UniParc:UPI000294FD08	UniProt:M0TCX1	MapMan:35.2	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G35280_001]

Coordinates

chr6:-:33539359..33540601

Molecular Weight (calculated)

35131.8 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.432

Length

307 amino acids

Sequence
(BLAST)

001: MVEHISLSIS FSLVIVEEAV VIVQVAAEVV RLTRPSTSFV KEHYAAIVIQ TAFRGYLAYD SLHSLSLSLS FGGLVKLQAL VRGHNVWKQA NMTLRCMQEL
101: VRVQARVRDQ HMRLAQESSA TVSQGSTKSS FNCDTSFWEP KYLQELAERR SMPSRDGSSF ADDWDDRPKT MEEIQAMLQV RKEAALKRER ALFYAFFHQA
201: SSKKLLWRSH RNPSPLLDEE VNAEVASVEE KRPHRWMDRW IVLRSSFDNR IDNRATASTD SHQDLGDRHC STLLLLLPRR HTPSSSQPVG QHPSSPLHCT
301: HLHNYQP

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.