Factsheet for GSMUA_Achr1P18950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	78.6	78.09
GSMUA_Achr1P16160_001	Banana	nucleus	74.02	75.67
HORVU7Hr1G075720.1	Barley	plasma membrane	73.14	61.36
TraesCS7B01G218800.3	Wheat	nucleus	72.93	61.28
TraesCSU01G104800.3	Wheat	nucleus	72.71	61.1
TraesCS7A01G317400.2	Wheat	nucleus	72.49	61.03
Os08t0115200-01	Rice	cytosol	72.27	60.96
GSMUA_Achr6P02050_001	Banana	cytosol	19.65	58.06
Zm00001d049684_P002	Maize	cytosol, mitochondrion	67.69	56.99
EES14418	Sorghum	cytosol	70.09	55.92
GSMUA_Achr6P35280_001	Banana	endoplasmic reticulum	36.24	54.07
Solyc10g005000.2.1	Tomato	nucleus	46.51	54.06
VIT_15s0048g02680.t01	Wine grape	nucleus	63.1	51.89
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	60.48	51.87
KRH47821	Soybean	nucleus	58.95	49.45
KRH06386	Soybean	mitochondrion, nucleus	58.95	49.09
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	48.91	48.48
PGSC0003DMT400029325	Potato	mitochondrion	34.06	46.99
CDY15200	Canola	nucleus	51.53	46.18
CDX90011	Canola	nucleus	51.09	46.06
AT4G00820.1	Thale cress	mitochondrion, nucleus	53.49	45.88
PGSC0003DMT400031576	Potato	nucleus	49.56	45.77
Solyc08g083240.2.1	Tomato	nucleus	48.69	45.6
Bra033284.1-P	Field mustard	nucleus	51.31	44.68
CDY69140	Canola	mitochondrion, nucleus	49.78	43.43
CDX91859	Canola	mitochondrion, nucleus	50.0	43.21
Bra000930.1-P	Field mustard	mitochondrion, nucleus	49.13	42.86
AT1G01110.2	Thale cress	nucleus	49.13	42.69
CDY05111	Canola	nucleus	38.65	41.26
Bra000717.1-P	Field mustard	nucleus	38.86	41.2
CDX90766	Canola	nucleus	38.65	41.07
AT4G10640.1	Thale cress	nucleus	36.9	39.95
CDY08131	Canola	nucleus	25.76	34.3
Bra017988.1-P	Field mustard	nucleus	25.98	34.0
CDY05931	Canola	nucleus	25.76	33.52
GSMUA_Achr10P...	Banana	nucleus	32.53	33.11
Solyc01g009340.2.1	Tomato	nucleus	28.38	32.26
PGSC0003DMT400038175	Potato	cytosol	36.24	32.11
AT3G49380.1	Thale cress	nucleus	24.45	31.82
GSMUA_Achr3P17820_001	Banana	cytosol	31.88	30.54
GSMUA_Achr7P22680_001	Banana	cytosol	30.57	30.11
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	30.13	30.07
GSMUA_Achr10P...	Banana	cytosol	25.76	27.96
GSMUA_Achr7P18240_001	Banana	cytosol	28.38	27.54
GSMUA_Achr10P...	Banana	cytosol	27.07	27.43
GSMUA_Achr2P20050_001	Banana	nucleus	17.03	26.35
GSMUA_Achr8P32220_001	Banana	cytosol	25.11	26.32
GSMUA_Achr11P...	Banana	mitochondrion	26.2	25.97
GSMUA_Achr4P22800_001	Banana	cytosol	24.45	25.81
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	22.93	25.49
GSMUA_Achr5P02600_001	Banana	cytosol	24.24	25.28
GSMUA_Achr6P14440_001	Banana	nucleus	9.39	25.15
GSMUA_Achr2P16650_001	Banana	nucleus	23.14	25.0
GSMUA_Achr4P31410_001	Banana	cytosol	23.8	24.77
GSMUA_Achr10P...	Banana	cytosol	22.49	24.35
GSMUA_Achr6P04930_001	Banana	cytosol	20.96	23.65
GSMUA_Achr7P02870_001	Banana	mitochondrion	15.5	23.59
GSMUA_Achr2P15730_001	Banana	cytosol	21.4	22.22

Protein Annotations

EnsemblPlants:GSMUA_Achr1P18950_001	EnsemblPlants:GSMUA_Achr1T18950_001	EnsemblPlantsGene:GSMUA_Achr1G18950_001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI0002963976
UniProt:M0S153	MapMan:35.2	:	:	:	:

Description

IQ calmodulin-binding motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G18950_001]

Coordinates

chr1:-:14145243..14147214

Molecular Weight (calculated)

51223.0 Da

IEP (calculated)

10.976

GRAVY (calculated)

-0.904

Length

458 amino acids

Sequence
(BLAST)

001: MGKKGSSSWL TAVKRAFRSP SKDSEKKASK QREEPEQEEE EKHKKEKRRW LFRKSSAHEQ QPQQGQQTRT PPPPQAAVTP EQRHAIALAV ASAATAEAAV
101: ATAQAAAEVV RLTQPSSSFA KEQHYAAVVI QTAFRGYLAR RALRALKGLV KLQALVRGHN VRKQAKMTLR CMQALVRVQA RVRDQRMRLA QESSSVVSRG
201: SNKSSFSCDT SLWESNFADD WDDRPRTIEE IQAMLQSRKE AALKRERALS YAFSHQLWRS DRNPSPALDE DADHEVASAG EQMPIRWMDR YIASRSSFDN
301: RASSRAARAS TDHRDPIKTL EIDTSRPFSY SAPHHHYQTH SPVTPSPSKT RPLQHPPAMV PNYMAATESA KARVRSQSAP RQRPATPERD RAGSAKKRLS
401: FPAPDPYGYS QSLRSPSFKS ATGRFAGDPR SNVSSSCNDS LGGEVSPSST TDLRRWLR

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.