Factsheet for GSMUA_Achr1P16160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	82.59	80.26
GSMUA_Achr1P18950_001	Banana	nucleus	75.67	74.02
GSMUA_Achr6P02050_001	Banana	cytosol	22.99	66.45
TraesCS7B01G218800.3	Wheat	nucleus	70.09	57.61
TraesCS7A01G317400.2	Wheat	nucleus	69.64	57.35
HORVU7Hr1G075720.1	Barley	plasma membrane	69.87	57.33
TraesCSU01G104800.3	Wheat	nucleus	69.64	57.25
Os08t0115200-01	Rice	cytosol	69.2	57.09
Zm00001d049684_P002	Maize	cytosol, mitochondrion	66.74	54.96
GSMUA_Achr6P35280_001	Banana	endoplasmic reticulum	37.5	54.72
EES14418	Sorghum	cytosol	69.2	54.01
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	57.37	48.13
Solyc10g005000.2.1	Tomato	nucleus	42.19	47.97
VIT_15s0048g02680.t01	Wine grape	nucleus	59.38	47.76
KRH47821	Soybean	nucleus	56.03	45.97
KRH06386	Soybean	mitochondrion, nucleus	56.03	45.64
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	46.88	45.45
Solyc08g083240.2.1	Tomato	nucleus	49.33	45.19
PGSC0003DMT400031576	Potato	nucleus	50.0	45.16
CDX90011	Canola	nucleus	50.89	44.88
CDY15200	Canola	nucleus	51.12	44.81
PGSC0003DMT400029325	Potato	mitochondrion	32.14	43.37
Bra033284.1-P	Field mustard	nucleus	50.89	43.35
AT4G00820.1	Thale cress	mitochondrion, nucleus	51.56	43.26
AT1G01110.2	Thale cress	nucleus	49.55	42.13
CDY69140	Canola	mitochondrion, nucleus	47.32	40.38
CDX91859	Canola	mitochondrion, nucleus	47.32	40.0
CDY05111	Canola	nucleus	38.17	39.86
Bra000930.1-P	Field mustard	mitochondrion, nucleus	46.65	39.81
Bra000717.1-P	Field mustard	nucleus	37.95	39.35
AT4G10640.1	Thale cress	nucleus	37.05	39.24
CDX90766	Canola	nucleus	37.72	39.21
CDY08131	Canola	nucleus	24.78	32.27
Bra017988.1-P	Field mustard	nucleus	25.0	32.0
CDY05931	Canola	nucleus	24.78	31.53
PGSC0003DMT400038175	Potato	cytosol	35.94	31.14
AT3G49380.1	Thale cress	nucleus	24.33	30.97
Solyc01g009340.2.1	Tomato	nucleus	27.68	30.77
GSMUA_Achr10P...	Banana	nucleus	30.36	30.22
GSMUA_Achr3P17820_001	Banana	cytosol	30.13	28.24
GSMUA_Achr7P22680_001	Banana	cytosol	29.24	28.17
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	28.79	28.1
GSMUA_Achr10P...	Banana	cytosol	24.55	26.07
GSMUA_Achr10P...	Banana	cytosol	26.12	25.89
GSMUA_Achr10P...	Banana	cytosol	23.88	25.3
GSMUA_Achr7P18240_001	Banana	cytosol	26.56	25.21
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	22.99	25.0
GSMUA_Achr11P...	Banana	mitochondrion	25.67	24.89
GSMUA_Achr4P22800_001	Banana	cytosol	23.88	24.65
GSMUA_Achr2P16650_001	Banana	nucleus	23.21	24.53
GSMUA_Achr5P02600_001	Banana	cytosol	23.88	24.37
GSMUA_Achr2P20050_001	Banana	nucleus	16.07	24.32
GSMUA_Achr6P04930_001	Banana	cytosol	21.65	23.89
GSMUA_Achr4P31410_001	Banana	cytosol	22.99	23.41
GSMUA_Achr8P32220_001	Banana	cytosol	22.77	23.34
GSMUA_Achr2P15730_001	Banana	cytosol	22.54	22.9
GSMUA_Achr6P14440_001	Banana	nucleus	8.71	22.81
GSMUA_Achr7P02870_001	Banana	mitochondrion	14.29	21.26

Protein Annotations

EnsemblPlants:GSMUA_Achr1P16160_001	EnsemblPlants:GSMUA_Achr1T16160_001	EnsemblPlantsGene:GSMUA_Achr1G16160_001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000294EA11
UniProt:M0S0C4	MapMan:35.2	:	:	:	:

Description

IQ calmodulin-binding motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G16160_001]

Coordinates

chr1:+:12099382..12101250

Molecular Weight (calculated)

50084.9 Da

IEP (calculated)

11.409

GRAVY (calculated)

-0.780

Length

448 amino acids

Sequence
(BLAST)

001: MGRKGSSSWL TAVKRAFMSP SKDSERKTSG QGEEEEKRKR EKRRWMFRKP STLEQQQQAR APTVVTPEER HAIALAVASA ATAEAAVATA QAAAEVVRLT
101: RPSASFVKEH YAAVVIQTAF RGYLARRALR ALKGLVKLQA LVRGHNVRKQ ANMTLRCMQA LVRAQARVRE QRMRLAQESA AAVSRGSNIS SFSCDTSFWD
201: SKYLQELAER RSMSRDGSSF ADDWDDRPRT MDEIQATLQR RKDAALRRER ALSYAFSHKV SSEHAYFSPA ACFPLPSRWM DRWIASRSSF DNRASSRARA
301: SVGYRDPIKT LEIDTSRPYS YSAPANPRRQ TPPSPQPDHR SISTAQTPTY HPAASVPNYM AATESAKARL RSQSAPRQRP GTPDRDRASS AKKRLSFPEP
401: ENLRSPSFKS AAARFAGEPR SNVSSSCNDS LVGEASPSST TDLRRWLR

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.