Factsheet for GSMUA_Achr10P13250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr2P09630_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P17820_001	Banana	cytosol	82.67	77.82
GSMUA_Achr7P18240_001	Banana	cytosol	69.11	65.89
Os05t0123200-01	Rice	plasma membrane	62.67	59.49
TraesCS1A01G064100.1	Wheat	cytosol	61.56	57.71
TraesCS1D01G064700.1	Wheat	cytosol	61.11	57.53
KXG21175	Sorghum	cytosol	60.44	57.51
TraesCS1B01G082100.1	Wheat	cytosol	61.11	57.29
HORVU1Hr1G013210.1	Barley	cytosol	61.11	56.82
Zm00001d035492_P009	Maize	cytosol	60.0	56.72
Zm00001d010975_P003	Maize	cytosol	59.11	55.65
VIT_08s0040g02360.t01	Wine grape	nucleus	58.22	54.7
KRG95941	Soybean	nucleus	57.78	54.51
KRH67648	Soybean	nucleus	57.56	54.3
PGSC0003DMT400045333	Potato	cytosol	54.89	52.44
Solyc10g086060.1.1	Tomato	cytosol	54.67	52.23
Solyc09g007410.2.1	Tomato	cytosol	56.0	52.17
PGSC0003DMT400004433	Potato	cytosol	55.56	52.08
Solyc10g084280.1.1	Tomato	nucleus	54.89	51.67
GSMUA_Achr7P22680_001	Banana	cytosol	53.11	51.4
PGSC0003DMT400027139	Potato	cytosol	54.89	51.35
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	52.0	50.98
CDY11238	Canola	cytosol, plastid	46.67	50.85
GSMUA_Achr10P...	Banana	cytosol	47.11	50.24
KRH19825	Soybean	cytosol	52.22	50.0
CDX80849	Canola	cytosol, plastid	46.89	49.53
KRH32420	Soybean	cytosol	51.33	48.73
TraesCS3D01G543500.1	Wheat	cytosol	52.67	47.78
CDY10410	Canola	cytosol, plastid	46.89	47.52
CDY04876	Canola	nucleus, plastid	46.89	47.42
CDY55696	Canola	nucleus, plastid	45.78	47.14
Bra028854.1-P	Field mustard	nucleus, plastid	46.44	46.97
AT5G03040.1	Thale cress	cytosol, plastid	48.0	46.85
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	52.89	44.82
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	52.0	44.49
CDX70333	Canola	cytosol	46.0	43.12
GSMUA_Achr11P...	Banana	mitochondrion	44.22	43.07
Bra009554.1-P	Field mustard	cytosol	44.89	42.89
AT3G09710.2	Thale cress	nucleus	43.78	42.09
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	54.0	41.61
Bra034081.1-P	Field mustard	nucleus	37.78	38.29
Bra001299.1-P	Field mustard	nucleus	36.0	34.25
CDX73992	Canola	nucleus	35.56	33.54
CDY07937	Canola	nucleus	34.67	32.64
GSMUA_Achr1P18950_001	Banana	nucleus	33.11	32.53
CDY22198	Canola	cytosol	38.89	31.31
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	32.0	31.24
CDY41307	Canola	cytosol	37.78	31.08
GSMUA_Achr1P16160_001	Banana	nucleus	30.22	30.36
GSMUA_Achr6P02050_001	Banana	cytosol	10.22	29.68
GSMUA_Achr7P02870_001	Banana	mitochondrion	19.78	29.57
GSMUA_Achr8P32220_001	Banana	cytosol	28.44	29.29
GSMUA_Achr4P31410_001	Banana	cytosol	28.22	28.86
GSMUA_Achr2P16650_001	Banana	nucleus	27.11	28.77
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	26.22	28.64
GSMUA_Achr4P22800_001	Banana	cytosol	27.56	28.57
GSMUA_Achr2P20050_001	Banana	nucleus	18.44	28.04
GSMUA_Achr10P...	Banana	cytosol	26.22	27.9
GSMUA_Achr6P04930_001	Banana	cytosol	25.11	27.83
GSMUA_Achr5P02600_001	Banana	cytosol	27.11	27.79
GSMUA_Achr10P...	Banana	cytosol	27.56	27.43
GSMUA_Achr6P35280_001	Banana	endoplasmic reticulum	18.67	27.36
GSMUA_Achr6P14440_001	Banana	nucleus	10.22	26.9
GSMUA_Achr2P15730_001	Banana	cytosol	23.78	24.26

Protein Annotations

EnsemblPlants:GSMUA_Achr10P13250_001	EnsemblPlants:GSMUA_Achr10T13250_001	EnsemblPlantsGene:GSMUA_Achr10G13250_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000295A938	UniProt:M0RHV1
MapMan:35.1	:	:	:	:	:

Description

Putative Protein IQ-DOMAIN 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G13250_001]

Coordinates

chr10:-:21974267..21978641

Molecular Weight (calculated)

50203.6 Da

IEP (calculated)

10.624

GRAVY (calculated)

-0.760

Length

450 amino acids

Sequence
(BLAST)

001: MGKKGKWFSA VKRVFSPESK AKKEARLKKK LESGTSKPAD SLERAASEVV PPPPPRHPEE DKVVEIENEQ SRHACSAAVA APAAIEPVVT SSEAAREIIR
101: LKSTTKYPGK TTEEIAAIKI QTAFRGHLAR RALRALRGLV RLKSLVDGDT VKRQATTTLR CMQTLARVQS QIRSRRIRML EENQALQRQM LLKHERELES
201: LKMGEEWDDS LQSKEQIEAS LLSKQEAAIR RERALAYAFS HQQWKSSSKP VNPLFMDPNN LQWGWSWLER WMAARPWETR STTDREPNDD RASIKSTMQS
301: DGGGVILKAY ACRNANPDKP SPSNQKPTSP KRGWAPLEDD LRSMVSLQSE RSRRHSLAAA SVRDDESLAG SPAVPSYMAP TESARAKSRF QSLSDDTIES
401: ADRSSVVSAK KRLSFPTGER YSPASPAAVR RSSGPPKVDM ALVKDVEVRS

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.