Factsheet for TraesCS3A01G538100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G543500.1	Wheat	cytosol	85.69	91.73
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	89.83	90.68
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	83.8	76.2
TraesCS1A01G064100.1	Wheat	cytosol	52.54	58.12
GSMUA_Achr10P...	Banana	nucleus	44.82	52.89
GSMUA_Achr3P17820_001	Banana	cytosol	46.14	51.26
VIT_08s0040g02360.t01	Wine grape	nucleus	44.44	49.27
KRG95941	Soybean	nucleus	43.13	48.01
KRH67648	Soybean	nucleus	42.94	47.8
PGSC0003DMT400027139	Potato	cytosol	42.56	46.99
CDY11238	Canola	cytosol, plastid	36.35	46.73
Solyc10g084280.1.1	Tomato	nucleus	42.0	46.65
Solyc09g007410.2.1	Tomato	cytosol	42.37	46.58
PGSC0003DMT400004433	Potato	cytosol	41.81	46.25
Solyc10g086060.1.1	Tomato	cytosol	40.87	46.07
PGSC0003DMT400045333	Potato	cytosol	40.49	45.65
CDX80849	Canola	cytosol, plastid	36.53	45.54
GSMUA_Achr7P18240_001	Banana	cytosol	40.3	45.34
KRH32420	Soybean	cytosol	40.11	44.94
KRH19825	Soybean	cytosol	39.55	44.68
CDY55696	Canola	nucleus, plastid	36.72	44.62
AT5G03040.1	Thale cress	cytosol, plastid	38.23	44.03
CDY04876	Canola	nucleus, plastid	36.53	43.6
Bra028854.1-P	Field mustard	nucleus, plastid	36.16	43.15
CDY10410	Canola	cytosol, plastid	35.97	43.02
TraesCS3A01G352500.1	Wheat	cytosol	39.55	42.08
Bra009554.1-P	Field mustard	cytosol	35.22	39.7
CDX70333	Canola	cytosol	35.59	39.38
AT3G09710.2	Thale cress	nucleus	34.09	38.68
Bra034081.1-P	Field mustard	nucleus	29.94	35.81
Bra001299.1-P	Field mustard	nucleus	28.06	31.5
CDX73992	Canola	nucleus	28.25	31.45
CDY07937	Canola	nucleus	27.31	30.33
CDY41307	Canola	cytosol	30.51	29.62
CDY22198	Canola	cytosol	31.07	29.52
TraesCS1A01G288100.2	Wheat	nucleus	27.12	27.64
TraesCS7A01G317400.2	Wheat	nucleus	28.06	27.39
TraesCS3A01G105600.1	Wheat	cytosol, nucleus, peroxisome	21.47	26.03
TraesCS7A01G112000.1	Wheat	nucleus	16.01	25.99
TraesCS5A01G029600.3	Wheat	nucleus	20.9	25.58
TraesCS5A01G425800.1	Wheat	cytosol, mitochondrion	19.96	24.65
TraesCS3A01G251400.1	Wheat	cytosol	19.4	23.9
TraesCS5A01G373000.1	Wheat	nucleus	19.21	23.39
TraesCS1A01G362400.1	Wheat	mitochondrion	17.89	23.23
TraesCS3A01G398900.1	Wheat	cytosol	23.16	19.74

Protein Annotations

EnsemblPlants:TraesCS3A01G538100.1	EnsemblPlantsGene:TraesCS3A01G538100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF89	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3A:+:749341348..749345247

Molecular Weight (calculated)

56658.6 Da

IEP (calculated)

10.925

GRAVY (calculated)

-0.645

Length

531 amino acids

Sequence
(BLAST)

001: MGKKPKWLGA VKKAFSPESK DQKLQRRLAA AGSSSAAYPR DLTPSASYLQ ARASSSGSAL PRYPDDFPEA SLPASAPLPV AQTQTQTQTQ TLTQTLTQEE
101: EHEIEHVAAA PAPAPAPATD APLPAPAPAA AAPPPPPPQA QAAIVPAPCS SPILSRELAA TKIQTAFRGH LARRALRALK GLVRLKSLVQ GHSVKRQATS
201: TLRCMQTLSR VQSKIRTRRI KMAEENQALQ RQLLLNQELE TLRMGDQWNT SLQSKEQIEA SLVSRQEAAA RRERALAYAF SHQWKSTSRS ANPMFVDPSN
301: PHWGWSWLER WMASRPFDGR NGTAEKDGSS VDRTSVNSTS LSMNLGQVET VTKADNQVVD SLKPNDDKPT PLSTPKPSGP APRQSPSTPS PVLARKKSAT
401: PKSGDGDGDD ARSVVSTVRS ERPRRHSMGA SSVRDDASLS GSSPSSVPSY MAATKSASAR AKSRVQSPML TEGAAQAETL EKGWSSVGSA KKRLSFPVGT
501: PPAATRRHSG PPKVRQAAVE GGTAEGDSSL V

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.