Factsheet for TraesCS3A01G105600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G107700.1	Wheat	cytosol	96.8	97.47
TraesCS3B01G124000.1	Wheat	cytosol	96.58	97.47
HORVU3Hr1G019240.2	Barley	mitochondrion, peroxisome	94.52	83.64
Os01t0194200-01	Rice	cytosol	83.56	82.81
OQU86150	Sorghum	cytosol	82.65	81.53
Zm00001d039471_P001	Maize	cytosol	81.05	78.89
Solyc08g062940.2.1	Tomato	cytosol	43.84	62.14
GSMUA_Achr6P04930_001	Banana	cytosol	56.39	60.84
GSMUA_Achr2P16650_001	Banana	nucleus	58.22	60.14
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	54.34	57.77
VIT_04s0008g01080.t01	Wine grape	nucleus	57.08	55.68
GSMUA_Achr10P...	Banana	cytosol	52.05	53.9
KRH61522	Soybean	cytosol	54.79	53.33
PGSC0003DMT400021183	Potato	cytosol	52.51	53.0
KRH15576	Soybean	cytosol	49.54	52.04
KRH52206	Soybean	cytosol	53.2	51.78
Bra034294.1-P	Field mustard	nucleus	46.8	51.64
CDY35313	Canola	nucleus	46.8	51.64
AT2G26180.1	Thale cress	cytosol	48.86	51.44
CDX77034	Canola	cytosol	46.12	51.01
KRH05433	Soybean	cytosol	47.95	50.85
GSMUA_Achr2P15730_001	Banana	cytosol	47.49	47.17
TraesCS3A01G251400.1	Wheat	cytosol	41.55	42.23
TraesCS1A01G362400.1	Wheat	mitochondrion	34.7	37.16
TraesCS5A01G425800.1	Wheat	cytosol, mitochondrion	29.68	30.23
TraesCS5A01G029600.3	Wheat	nucleus	28.77	29.03
TraesCS5A01G373000.1	Wheat	nucleus	26.94	27.06
TraesCS7A01G112000.1	Wheat	nucleus	19.86	26.61
TraesCS1A01G064100.1	Wheat	cytosol	27.4	25.0
TraesCS3A01G352500.1	Wheat	cytosol	26.94	23.65
TraesCS7A01G317400.2	Wheat	nucleus	27.17	21.88
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	26.03	21.47
TraesCS1A01G288100.2	Wheat	nucleus	20.78	17.47
TraesCS3A01G398900.1	Wheat	cytosol	19.86	13.96

Protein Annotations

EnsemblPlants:TraesCS3A01G105600.1	EnsemblPlantsGene:TraesCS3A01G105600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295
PANTHER:PTHR32295:SF88	PFAM:PF00612	PFscan:PS50096	SEG:seg	MapMan:35.2	:

Description

No Description!

Coordinates

chr3A:-:69504593..69506750

Molecular Weight (calculated)

47914.3 Da

IEP (calculated)

11.254

GRAVY (calculated)

-0.609

Length

438 amino acids

Sequence
(BLAST)

001: MGGSGKWVKS LIGLKKPDRE DCCKNKLLVP SGLGVGGKGR KWRLWRSSSG DHGSLWRGSR GGSQRSAASE ASDDASSLAA AAAAADMFTA ALATVARAPA
101: KDFMAVRQEW AAIRIQTAFR GFLARRALRA LKGLVRLQAI VRGRQVRKQA AVTLRCMQAL VRVQARIRAR RVRMSTEGQA VQKLIQARRT KLDILREAEE
201: GWCDSQGTLE AVRVKLQKRQ EGAIKRERAI AYVYHGVAKC NQPKGGNGRS NQSGLLLKHQ HCDKNNGSWS WLERWMAARP WENRLMEEHN QTNASSPDLV
301: PSKNCEDAFG VLADFSEPNS VKVRKNNVSK RISAKPPGAT HPQRFKAQSI SSLSTELHND ESSASSSSCF ASTPLSFSTL LTPEKTNNGS GVRSRPNYMS
401: LTESIKAKRK PCGAQKTTAS KQLDDRKAPG AELKAAKA

Best Arabidopsis Sequence Match ( AT2G26180.1 )
(BLAST)

001: MGASGKWVKS IIGLKKLEKD EIEKGNGKNK KWKLWRTTSV DSWKGFRGKH RSDSDGVDSS TVYSAAVATV LRAPPKDFKA VREEWAAIRI QTAFRGFLAR
101: RALRALKGIV RLQALVRGRQ VRKQAAVTLR CMQALVRVQA RVRARRVRMT VEGQAVQKLL DEHRTKSDLL KEVEEGWCDR KGTVDDIKSK LQQRQEGAFK
201: RERALAYALA QKQWRSTTSS NLKTNSSISY LKSQEFDKNS WGWSWLERWM AARPWETRLM DTVDTAATPP PLPHKHLKSP ETADVVQVRR NNVTTRVSAK
301: PPPHMLSSSP GYEFNESSGS SSICTSTTPV SGKTGLVSDN SSSQAKKHKP SYMSLTESTK AKRRTNRGLR QSMDEFQFMK NSGMFTGELK TSPSSDPFVS
401: FSKPLGVPTR FEKPRG

Arabidopsis Description

IQD6At2g26180 [Source:UniProtKB/TrEMBL;Acc:O64852]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.