Factsheet for TraesCS3A01G398900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G431200.1	Wheat	cytosol	96.47	96.01
TraesCS3D01G392900.1	Wheat	cytosol	93.9	94.05
HORVU3Hr1G089690.1	Barley	cytosol	92.94	92.2
EES01898	Sorghum	cytosol	63.56	70.34
Os01t0896200-01	Rice	mitochondrion	37.4	69.14
Zm00001d012167_P001	Maize	cytosol	60.83	65.57
GSMUA_Achr8P32220_001	Banana	cytosol	31.62	45.08
GSMUA_Achr7P02870_001	Banana	mitochondrion	21.67	44.85
CDY05984	Canola	nucleus	28.89	36.36
CDX71881	Canola	nucleus	28.41	35.83
Bra007471.1-P	Field mustard	nucleus	28.41	35.69
KRH50198	Soybean	cytosol	30.5	35.65
KRH71267	Soybean	cytosol	30.34	35.33
AT3G59690.2	Thale cress	nucleus	29.05	35.01
CDY23391	Canola	cytosol	25.84	34.92
CDY30433	Canola	cytosol	25.04	34.67
VIT_05s0094g00530.t01	Wine grape	cytosol	32.74	34.11
Solyc08g014280.2.1	Tomato	cytosol	29.21	33.77
PGSC0003DMT400041427	Potato	cytosol	28.25	32.9
Bra037689.1-P	Field mustard	cytosol	25.2	29.79
CDX79809	Canola	nucleus	27.93	29.1
CDY66694	Canola	nucleus	27.77	28.88
CDX83468	Canola	plasma membrane	25.2	28.49
CDY44247	Canola	nucleus	24.88	27.88
Bra004776.1-P	Field mustard	nucleus	27.93	27.84
Bra000318.1-P	Field mustard	nucleus	26.32	27.56
Solyc06g053450.2.1	Tomato	nucleus	26.16	27.53
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	26.81	27.07
TraesCS1A01G064100.1	Wheat	cytosol	20.39	26.46
AT2G43680.1	Thale cress	nucleus	27.13	25.26
TraesCS3A01G352500.1	Wheat	cytosol	19.74	24.65
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	19.74	23.16
TraesCS7A01G112000.1	Wheat	nucleus	11.56	22.02
TraesCS7A01G317400.2	Wheat	nucleus	19.1	21.88
TraesCS3A01G251400.1	Wheat	cytosol	14.77	21.35
TraesCS1A01G362400.1	Wheat	mitochondrion	13.64	20.78
TraesCS5A01G029600.3	Wheat	nucleus	13.96	20.05
TraesCS5A01G425800.1	Wheat	cytosol, mitochondrion	13.8	20.0
TraesCS1A01G288100.2	Wheat	nucleus	16.69	19.96
TraesCS3A01G105600.1	Wheat	cytosol, nucleus, peroxisome	13.96	19.86
TraesCS5A01G373000.1	Wheat	nucleus	11.72	16.74

Protein Annotations

EnsemblPlants:TraesCS3A01G398900.1	EnsemblPlantsGene:TraesCS3A01G398900	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18	PFAM:PF00612
PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:20.6.2	:	:

Description

No Description!

Coordinates

chr3A:-:645637506..645641269

Molecular Weight (calculated)

69217.2 Da

IEP (calculated)

11.865

GRAVY (calculated)

-0.906

Length

623 amino acids

Sequence
(BLAST)

001: MGKKGSGWIT ALKKAFTTTP KDKPTNVQLV AQYPPQQPPP QPQQYRGNAR DKKRWGFGRS RPHADPAPLM SIPLYRQPSS IEKILGDAEM ERQYYARPPA
101: QYQIAPAKPT TATVAATAPT TPAARERERE WGRDRERERD AGGDKQQRQQ QAAVLQLPAP PSSPPPLIRR FDHDREQQQR LQRLQQGRAE MAEWRQPQQQ
201: HTRTRARQRA VAPEQARAAA VAIQAAFRGY SARRSYRSLR GLIRLQAVVR GPSVRRQTAH AMRCMQTLVR VQAQVRASRV EAMERRNDRH GAMLRDGRRW
301: RSGSQDGGVW DDSLLSRDEE DARTKRKAEA VMKRERALAY SYSHQVMKST PMAAHAILAD LQSGRNPWWW SPIDRSSHER DYPRHVEPAV SRPRPTPAVA
401: RREMTMSVMT PMSTAGHREM NMNMMTPMSA MTGHRQMSMP TPISTTAAHR QMSTATPMTT AANTPARSVA SAYYKQPSKP ARDARGAAAP PSSHGGGGSV
501: RDDESLTSCP AFGVPNYMTP TMSASAKARA RAHLLQQQLD KERRAAEQKP RFSFGLGHSI GSWAKSPFWR GGGDQSAAPS RVGTPAASTA GGGGRHKHRR
601: SVSGLSVDST VSMPAGVGRR SFK

Best Arabidopsis Sequence Match ( AT2G43680.5 )
(BLAST)

001: MVKKGSWFSA IKRVFTPHSK EKLANEPERK SGKEKKKKGF GKLRHGETNS FLPIFREPSS IEKILGEAER DHNLVFRPPT PDRPNPYSAS PPPRPASPRV
101: ASPRPTSPRV ASPRVPSPRA EVPRTLSPKP PSPRAEVPRS LSPKPPSPRA DLPRSLSPKP FDRSKPSSAS ANAPPTLRPA STRVPSQRIT PHSVPSPRPS
201: SPRGASPQAI SSKPPSPRAE PPTLDTPRPP SPRAASLRAD PPRLDAARPT TPRPPSPLAD APRLDAPRPT TPKPPSPRSD PPRLDAPRPT TPKPPSPRSV
301: SPRAVQRREI VYRPEPTLPV QHASATKIQG AFRGYMARKS FRALKGLVRL QGVVRGYSVK RQTINAMKYM QQVVRVQSQI QSRRIKMLEN QAQVEKDEAK
401: WAASEAGNDN WDDSVLTKEE RDSRSQRKTD AIIKRERSMA YAYSRKLWKN SPKSTQDNRS FPQWWNWVDR QNPLASPAPS YSQPQRDFRL TPSRLCPSPL
501: SQSSKQHHIR LDNHFDTSTP RSSRSTFHTP SRPIHTGTSR YSRGRLRGQD SPFKDDDSLT SCPPFPSYMA PTVSAKAKVR PNSNPKERVM GTPVSEKRRM
601: SYPPTQDTFR WNKGSLVMSN SSSHRGPGSP GGVVLEKHKT LKSVGNLSIG STASMATTVG RKEFNRFV

Arabidopsis Description

IQD14IQD14 [Source:UniProtKB/TrEMBL;Acc:A0A178VRE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.