Factsheet for Bra007471.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05984	Canola	nucleus	98.19	98.38
CDX71881	Canola	nucleus	95.56	95.95
AT3G59690.2	Thale cress	nucleus	88.71	85.11
Bra037689.1-P	Field mustard	cytosol	59.68	56.17
Bra000318.1-P	Field mustard	nucleus	65.32	54.45
KRH50198	Soybean	cytosol	58.27	54.22
Bra004776.1-P	Field mustard	nucleus	66.94	53.12
KRH71267	Soybean	cytosol	57.26	53.08
Solyc08g014280.2.1	Tomato	cytosol	55.24	50.83
PGSC0003DMT400041427	Potato	cytosol	54.44	50.47
VIT_05s0094g00530.t01	Wine grape	cytosol	58.47	48.49
GSMUA_Achr8P32220_001	Banana	cytosol	36.49	41.42
Solyc06g053450.2.1	Tomato	nucleus	48.99	41.05
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	49.6	39.87
GSMUA_Achr7P02870_001	Banana	mitochondrion	24.19	39.87
Os01t0896200-01	Rice	mitochondrion	23.79	35.01
EES01898	Sorghum	cytosol	37.1	32.68
Zm00001d012167_P001	Maize	cytosol	37.1	31.83
TraesCS3D01G392900.1	Wheat	cytosol	36.09	28.78
HORVU3Hr1G089690.1	Barley	cytosol	36.29	28.66
TraesCS3B01G431200.1	Wheat	cytosol	36.09	28.59
TraesCS3A01G398900.1	Wheat	cytosol	35.69	28.41
Bra028854.1-P	Field mustard	nucleus, plastid	25.4	28.31
Bra005462.1-P	Field mustard	cytosol, plastid	14.72	27.55
Bra033443.1-P	Field mustard	cytosol	23.99	26.74
Bra009554.1-P	Field mustard	cytosol	23.79	25.05
Bra021588.1-P	Field mustard	cytosol, plastid	12.7	23.86
Bra031331.1-P	Field mustard	cytosol	17.94	23.18
Bra017988.1-P	Field mustard	nucleus	16.33	23.14
Bra000717.1-P	Field mustard	nucleus	19.96	22.92
Bra033284.1-P	Field mustard	nucleus	23.99	22.62
Bra021888.1-P	Field mustard	plastid	11.69	22.39
Bra034081.1-P	Field mustard	nucleus	19.96	22.3
Bra034294.1-P	Field mustard	nucleus	17.54	21.91
Bra019589.1-P	Field mustard	nucleus	20.77	21.68
Bra025971.1-P	Field mustard	nucleus	16.33	21.6
Bra001855.1-P	Field mustard	cytosol	14.72	21.28
Bra017997.1-P	Field mustard	nucleus, plastid	20.36	21.26
Bra016042.1-P	Field mustard	cytosol	17.54	21.12
Bra000930.1-P	Field mustard	mitochondrion, nucleus	21.98	20.76
Bra023846.1-P	Field mustard	cytosol	15.73	18.7
Bra001299.1-P	Field mustard	nucleus	17.54	18.39

Protein Annotations

Gene3D:1.20.5.190	MapMan:20.6.2	EnsemblPlantsGene:Bra007471	EnsemblPlants:Bra007471.1	EnsemblPlants:Bra007471.1-P	InterPro:DUF4005
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:M4CTC8	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18	SMART:SM00015	UniParc:UPI0002542F36	SEG:seg

Description

AT3G59690 (E=5e-217) IQD13 | IQD13 (IQ-domain 13); calmodulin binding

Coordinates

chrA09:+:29378344..29380536

Molecular Weight (calculated)

55965.7 Da

IEP (calculated)

11.670

GRAVY (calculated)

-0.950

Length

496 amino acids

Sequence
(BLAST)

001: MGKKGSWFSA IKRVFTPHSK EKQLSNNQEP ERKSNNKKEK KKKSLGKKLR DGETNSFLPI FRQPSSIEKI LCEAEREHNL VFRPPTPTDR ANSVPSPHIR
101: PASPKVSSQR YVSSPRPISP RVASPRALSP KPPSPRAASP RIVQRREYVR RPEPTLLVKK ASATKIQAAF RGYMARRSFR ALKGLVRLQG VVRGHSVKRQ
201: TMNAMKYMQL LVRVQTQVQS RRIQMLEHRA RNEKDDPKLA SSLASDDWDD SVLTKEEKEA RLHRKIDAMI KRERSMAYAY SHQLWKNSPR SAQDIRTNGV
301: PLWWNWVDRQ NNQTQPFRLT PTRPSPSPQA HSSNKNHSRL NNSFDVSTPN SSKSAFLTPS RPIHTPQPSR YSRGGGRGTQ DSPFKDDDSL TSCPPFSAPS
401: YMAPTVSAKA KLRANSNPKE RVDGTTPEKR RSSFPLGSFK WNKGSLFMSN NNKGSPSSGA VVLEKHKALK SVGNMSIDST VSMPATIGKR SFNRFA

Best Arabidopsis Sequence Match ( AT3G59690.1 )
(BLAST)

001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA

Arabidopsis Description

IQD13IQ-domain 13 [Source:UniProtKB/TrEMBL;Acc:Q9M199]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.