Factsheet for TraesCS3D01G392900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G431200.1	Wheat	cytosol	95.98	95.37
TraesCS3A01G398900.1	Wheat	cytosol	94.05	93.9
HORVU3Hr1G089690.1	Barley	cytosol	94.69	93.79
EES01898	Sorghum	cytosol	64.63	71.4
Os01t0896200-01	Rice	mitochondrion	37.94	70.03
Zm00001d012167_P001	Maize	cytosol	61.9	66.61
GSMUA_Achr8P32220_001	Banana	cytosol	32.15	45.77
GSMUA_Achr7P02870_001	Banana	mitochondrion	21.86	45.18
CDY05984	Canola	nucleus	28.94	36.36
Bra007471.1-P	Field mustard	nucleus	28.78	36.09
CDX71881	Canola	nucleus	28.62	36.03
KRH50198	Soybean	cytosol	30.71	35.83
CDY23391	Canola	cytosol	26.37	35.57
KRH71267	Soybean	cytosol	30.55	35.51
CDY30433	Canola	cytosol	25.56	35.33
AT3G59690.2	Thale cress	nucleus	29.1	35.01
VIT_05s0094g00530.t01	Wine grape	cytosol	33.12	34.45
Solyc08g014280.2.1	Tomato	cytosol	28.94	33.4
PGSC0003DMT400041427	Potato	cytosol	27.97	32.52
Bra037689.1-P	Field mustard	cytosol	25.72	30.36
CDX79809	Canola	nucleus	27.97	29.1
CDX83468	Canola	plasma membrane	25.72	29.04
CDY66694	Canola	nucleus	27.81	28.88
CDY44247	Canola	nucleus	25.4	28.42
Bra000318.1-P	Field mustard	nucleus	27.01	28.24
Bra004776.1-P	Field mustard	nucleus	27.97	27.84
Solyc06g053450.2.1	Tomato	nucleus	26.21	27.53
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	26.85	27.07
TraesCS1D01G064700.1	Wheat	cytosol	20.42	26.57
AT2G43680.1	Thale cress	nucleus	27.49	25.56
TraesCS3D01G346500.1	Wheat	cytosol	19.94	24.85
TraesCS3D01G543500.1	Wheat	cytosol	19.13	23.99
TraesCS7D01G107600.2	Wheat	nucleus	11.58	22.02
TraesCS3D01G251800.2	Wheat	cytosol	15.11	21.22
TraesCS3D01G107700.1	Wheat	cytosol	14.79	21.15
TraesCS5D01G037300.2	Wheat	nucleus	13.99	20.23
TraesCS1D01G287100.2	Wheat	cytosol	16.72	19.66
TraesCS1D01G367300.2	Wheat	mitochondrion, plastid	13.99	19.29
TraesCS5D01G382500.1	Wheat	nucleus	12.38	17.58

Protein Annotations

EnsemblPlants:TraesCS3D01G392900.1	EnsemblPlantsGene:TraesCS3D01G392900	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18	PFAM:PF00612
PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:20.6.2	:	:

Description

No Description!

Coordinates

chr3D:-:508079854..508083658

Molecular Weight (calculated)

69155.2 Da

IEP (calculated)

11.865

GRAVY (calculated)

-0.899

Length

622 amino acids

Sequence
(BLAST)

001: MGKKGSSWIT ALKKAFTTNP KDKPTNVQLV AQYPQPPPPQ PPQQYRESAR DKKRWGFGRS RQHADPAPLM SIPLYRQPSS IEKILGDAEM ERQYYARPPA
101: QYQIAPAKPT TATVAATAPT TPAARERERE WGRERERERE RDGGGDKQQQ HAAMLQLPAP PSSPPPLIRR FDHDREQQQR LQRLQQGRAE MAEWRQPQQH
201: TRTRARQRAV APEQARAAAV AIQAAFRGYS ARRSYRSLRG LIRLQAVVRG PSVRRQTAHA MRCMQTLVRV QAQVRASRVE AMERRNDRHG AMLRDGRRWR
301: SGSQDGGMWD DSLLSRDEAD ARTKRKAEAV MKRERALAYS YSHQVMKSTP MAAHAILADL QSGRNPWWWS PIDRSSHERE YPRHVEPAVS RPRPTLAVAR
401: REMSMSMMTP MSTAGHREMN MMTPISTTAA HRQMNTMTPI STTAAHRQMS MATPMTTAAN TPARSVVSAY YKQPSNKPAR GARGAAPPSS HGGGSVRDDE
501: SLTSCPAFGV PNYMTPTMSA SAKARARAHL LQQQLDKERR AAEQKPRFSF GLGQSIGSWA KSPFWRGGGG GGEQSAAPSR VGTPAASTAG GGGRHKHRRS
601: VSGLSVDSTV SMPAGVGRRS FK

Best Arabidopsis Sequence Match ( AT3G59690.1 )
(BLAST)

001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA

Arabidopsis Description

IQD13IQ-domain 13 [Source:UniProtKB/TrEMBL;Acc:Q9M199]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.