Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G029600.3 | Wheat | nucleus | 95.12 | 94.24 |
| HORVU5Hr1G007780.1 | Barley | cytosol | 92.33 | 92.54 |
| TraesCS5B01G028200.1 | Wheat | nucleus | 93.02 | 90.29 |
| Os12t0619000-01 | Rice | cytosol | 71.86 | 69.91 |
| KXG24027 | Sorghum | cytosol | 66.05 | 64.55 |
| Zm00001d031098_P004 | Maize | cytosol | 64.42 | 54.85 |
| TraesCS5D01G382500.1 | Wheat | nucleus | 55.12 | 54.11 |
| CDY37387 | Canola | cytosol | 41.86 | 46.88 |
| Bra031331.1-P | Field mustard | cytosol | 41.86 | 46.88 |
| CDY24286 | Canola | cytosol | 43.26 | 46.04 |
| GSMUA_Achr4P31410_001 | Banana | cytosol | 46.98 | 45.91 |
| CDX92933 | Canola | cytosol, plastid | 42.79 | 45.89 |
| CDY10618 | Canola | cytosol | 42.56 | 45.07 |
| GSMUA_Achr5P02600_001 | Banana | cytosol | 45.35 | 44.42 |
| GSMUA_Achr4P22800_001 | Banana | cytosol | 44.65 | 44.24 |
| AT3G22190.2 | Thale cress | cytosol | 43.26 | 44.08 |
| VIT_06s0009g00210.t01 | Wine grape | cytosol | 45.58 | 44.04 |
| KRH26707 | Soybean | cytosol | 42.79 | 43.6 |
| KRH22612 | Soybean | cytosol | 43.02 | 43.53 |
| KRH39086 | Soybean | cytosol | 42.09 | 41.71 |
| Bra001855.1-P | Field mustard | cytosol | 33.26 | 41.69 |
| Solyc11g071840.1.1 | Tomato | cytosol | 43.26 | 41.52 |
| CDY39505 | Canola | cytosol | 37.67 | 41.01 |
| CDX92931 | Canola | mitochondrion, nucleus | 23.49 | 39.61 |
| CDY58749 | Canola | cytosol | 40.93 | 38.6 |
| Bra023846.1-P | Field mustard | cytosol | 36.74 | 37.89 |
| CDY24282 | Canola | mitochondrion | 23.72 | 33.44 |
| TraesCS3D01G107700.1 | Wheat | cytosol | 29.07 | 28.74 |
| TraesCS7D01G107600.2 | Wheat | nucleus | 20.7 | 27.22 |
| TraesCS3D01G251800.2 | Wheat | cytosol | 25.81 | 25.06 |
| TraesCS1D01G367300.2 | Wheat | mitochondrion, plastid | 23.72 | 22.62 |
| TraesCS3D01G346500.1 | Wheat | cytosol | 25.81 | 22.24 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 24.65 | 22.18 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 24.65 | 21.37 |
| TraesCS1D01G287100.2 | Wheat | cytosol | 20.0 | 16.26 |
| TraesCS3D01G392900.1 | Wheat | cytosol | 20.23 | 13.99 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G037300.2 | EnsemblPlantsGene:TraesCS5D01G037300 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF23 | PFAM:PF00612 | PFscan:PS50096 |
| SEG:seg | SMART:SM00015 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:36477279..36481638
Molecular Weight (calculated)
46339.3 Da
IEP (calculated)
10.936
GRAVY (calculated)
-0.955
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISSKWIKS LVGIKKHGKA QNGESSREVS QRRSSAAQVL HKRKHSVDTE GALAVAEHRV QTEPLASDTN TQTISSETEL NTKEHQAATI IQSAFRAFLA
101: RRALRALKGL VRLQALVRGH AVRKQAAETL QCMQSLVKAQ ARVRARQVRI GLEGQVPQKK APEQNAQEDQ AREIEERWCG GIGSAEEMQA KVLKKQEAAA
201: KRERAMAYAL THQRQAGSRK QKAADVQGPE ADENQWGRNW VERWVAVRPW ENRLLDSNAK ENVPIGDDKE AEENGDRDVN KPKGKVAVSG IQLNGSSQTK
301: DAKHKKSHSD ASGSSSGQSA AAPPAASLGS SKLKPKPSDQ TSEEVSPQPT DPAPRSTSNP KERPAAQVNA PTKKRLSLPN NAAAGGAARK GQANSSEKAQ
401: PVGSKNKAKG ASKSESKQRP SPGSTSAKRV
101: RRALRALKGL VRLQALVRGH AVRKQAAETL QCMQSLVKAQ ARVRARQVRI GLEGQVPQKK APEQNAQEDQ AREIEERWCG GIGSAEEMQA KVLKKQEAAA
201: KRERAMAYAL THQRQAGSRK QKAADVQGPE ADENQWGRNW VERWVAVRPW ENRLLDSNAK ENVPIGDDKE AEENGDRDVN KPKGKVAVSG IQLNGSSQTK
301: DAKHKKSHSD ASGSSSGQSA AAPPAASLGS SKLKPKPSDQ TSEEVSPQPT DPAPRSTSNP KERPAAQVNA PTKKRLSLPN NAAAGGAARK GQANSSEKAQ
401: PVGSKNKAKG ASKSESKQRP SPGSTSAKRV
001: MGASGRWIKA LVGFTKSDKS RSSKKDENVK VATKSRFGRK NSVDFDFEKF QDGFEDSNTR SMVDTGVSTS TSLQSYGGVA YDEQSRENRA ATRIQTAYRG
101: FLARRALRAL KGLVRLQALV RGHAVRKQAA VTLRCMQALV RVQARVRARR VRLALELESE TSQQTLQQQL ADEARVREIE EGWCDSIGSV EQIQAKLLKR
201: QEAAAKRERA MAYALTHQWQ AGTRLLSAHS GFQPDKNNWG WNWLERWMAV RPWENRFLDS NLRDDAKLGE NGMEQSENVP KTQIKSVSKM PNTSNLVSGV
301: SSQMTGPCQS DGDSSSPGIS SSIPVVSKAK SKPAKDDLAV EVNSRPGAGP RSHSNPKERS REPNRSSKER LSLPNSGKSL GSQSTKANRA GKLTPASQKV
401: VEEKSAQNQR RRNSDPIKQR LA
101: FLARRALRAL KGLVRLQALV RGHAVRKQAA VTLRCMQALV RVQARVRARR VRLALELESE TSQQTLQQQL ADEARVREIE EGWCDSIGSV EQIQAKLLKR
201: QEAAAKRERA MAYALTHQWQ AGTRLLSAHS GFQPDKNNWG WNWLERWMAV RPWENRFLDS NLRDDAKLGE NGMEQSENVP KTQIKSVSKM PNTSNLVSGV
301: SSQMTGPCQS DGDSSSPGIS SSIPVVSKAK SKPAKDDLAV EVNSRPGAGP RSHSNPKERS REPNRSSKER LSLPNSGKSL GSQSTKANRA GKLTPASQKV
401: VEEKSAQNQR RRNSDPIKQR LA
Arabidopsis Description
IQD5IQD5 [Source:UniProtKB/TrEMBL;Acc:A0A178VHN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.