Factsheet for TraesCS3D01G346500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G385100.1	Wheat	cytosol	99.4	99.4
TraesCS3A01G352500.1	Wheat	cytosol	99.4	99.4
HORVU3Hr1G087500.2	Barley	cytosol	98.4	98.4
Os01t0833800-01	Rice	plasma membrane	82.97	82.8
KXG33651	Sorghum	cytosol	79.16	79.32
Zm00001d042973_P007	Maize	cytosol	78.76	77.51
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	51.7	56.21
GSMUA_Achr7P22680_001	Banana	cytosol	49.9	53.55
PGSC0003DMT400004433	Potato	cytosol	48.9	50.83
Solyc10g084280.1.1	Tomato	nucleus	48.5	50.63
PGSC0003DMT400027139	Potato	cytosol	48.5	50.31
Solyc09g007410.2.1	Tomato	cytosol	48.7	50.31
TraesCS1D01G064700.1	Wheat	cytosol	47.7	49.79
GSMUA_Achr10P...	Banana	cytosol	42.08	49.76
VIT_08s0040g02360.t01	Wine grape	nucleus	47.29	49.27
PGSC0003DMT400045333	Potato	cytosol	45.49	48.2
Solyc10g086060.1.1	Tomato	cytosol	45.09	47.77
GSMUA_Achr11P...	Banana	mitochondrion	43.29	46.75
KRH32420	Soybean	cytosol	43.89	46.2
KRH19825	Soybean	cytosol	43.49	46.17
KRG95941	Soybean	nucleus	44.09	46.12
KRH67648	Soybean	nucleus	44.09	46.12
CDY11238	Canola	cytosol, plastid	37.88	45.76
CDX80849	Canola	cytosol, plastid	37.07	43.43
TraesCS3D01G543500.1	Wheat	cytosol	42.28	42.54
CDY10410	Canola	cytosol, plastid	37.07	41.67
AT5G03040.1	Thale cress	cytosol, plastid	38.48	41.65
CDY04876	Canola	nucleus, plastid	36.67	41.12
Bra028854.1-P	Field mustard	nucleus, plastid	36.47	40.9
CDY55696	Canola	nucleus, plastid	35.47	40.5
TraesCS1D01G287100.2	Wheat	cytosol	41.48	39.13
CDX70333	Canola	cytosol	36.67	38.12
Bra009554.1-P	Field mustard	cytosol	35.67	37.79
AT3G09710.2	Thale cress	nucleus	34.27	36.54
Bra034081.1-P	Field mustard	nucleus	29.86	33.56
Bra001299.1-P	Field mustard	nucleus	28.66	30.23
CDX73992	Canola	nucleus	28.26	29.56
CDY07937	Canola	nucleus	27.45	28.66
CDY22198	Canola	cytosol	31.86	28.44
TraesCS3D01G107700.1	Wheat	cytosol	24.05	27.59
CDY41307	Canola	cytosol	29.86	27.24
TraesCS7D01G107600.2	Wheat	nucleus	17.03	25.99
TraesCS3D01G251800.2	Wheat	cytosol	23.05	25.96
TraesCS5D01G037300.2	Wheat	nucleus	22.24	25.81
TraesCS1D01G367300.2	Wheat	mitochondrion, plastid	20.84	23.06
TraesCS5D01G382500.1	Wheat	nucleus	20.24	23.06
TraesCS3D01G392900.1	Wheat	cytosol	24.85	19.94

Protein Annotations

EnsemblPlants:TraesCS3D01G346500.1	EnsemblPlantsGene:TraesCS3D01G346500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612	PFscan:PS50096
SEG:seg	SMART:SM00015	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3D:-:457554571..457558139

Molecular Weight (calculated)

55771.1 Da

IEP (calculated)

10.972

GRAVY (calculated)

-0.829

Length

499 amino acids

Sequence
(BLAST)

001: MAKKGKWFSA VRRVFSSSDP EGKEAKTEKA DKPKSRRKWP FGKSKRFDPP TSTVSDITPV APSPLPLPLP PTQPPQPQSE EIKDVKPVET ESEQNKHAYS
101: VALASAVAAE AAAVAAQAAA EVVRLTAVPA ATSRPPVCSQ EELAAVKIQT AFRGYLARRA LRALRGLVRL KSLVDGNAVK RQTAHTLHCT QTMARVQTQI
201: YSRRVKMEEE KQALQRQLQL KHQRELEKMK IDEDWDHSHQ SKEQIEASLM MKQEAALRRE RALAYAFSHQ WKNSGRTVTP TFTDQGNPNW GWSWMERWMS
301: ARPWENRVVS NKDKDGALTK NPSTNAARTF VPRALSIQRP ATPSKSSRPP SRQSPSTPPS KNPSVAGKFR PSSPRDSWLY REDDLRSITS IRSERPRRLS
401: TGGGSIQDDS SLTSTPALPS YMQSTKSARA KSRYHMVFAD KFEVPDRASL VHSSIKKRLS FPAAEKPNVT PADKLKERAR RHSDPPKVDP ASLKDVNVA

Best Arabidopsis Sequence Match ( AT3G52290.1 )
(BLAST)

001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA

Arabidopsis Description

IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.