CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX90725
CDY05064
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	CDX86457	AT3G27960.1	21798944
AT5G03040.1	CDY58518	AT3G27960.1	21798944
AT5G03040.1	CDX90725	AT4G09570.1	19130088
AT5G03040.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11238	Canola	cytosol, plastid	88.03	90.8
CDY04876	Canola	nucleus, plastid	88.97	85.17
CDY55696	Canola	nucleus, plastid	85.45	83.3
CDY10410	Canola	cytosol, plastid	85.92	82.43
AT5G03040.1	Thale cress	cytosol, plastid	85.45	78.96
CDX70333	Canola	cytosol	84.04	74.58
KRG95941	Soybean	nucleus	55.4	49.48
KRH67648	Soybean	nucleus	53.76	48.01
VIT_08s0040g02360.t01	Wine grape	nucleus	53.29	47.39
KRH19825	Soybean	cytosol	52.11	47.23
PGSC0003DMT400045333	Potato	cytosol	52.11	47.13
Solyc10g086060.1.1	Tomato	cytosol	51.88	46.92
GSMUA_Achr10P...	Banana	nucleus	49.53	46.89
Solyc10g084280.1.1	Tomato	nucleus	52.58	46.86
KRH32420	Soybean	cytosol	51.88	46.62
CDX73992	Canola	nucleus	52.11	46.54
PGSC0003DMT400004433	Potato	cytosol	52.35	46.46
PGSC0003DMT400027139	Potato	cytosol	52.35	46.36
GSMUA_Achr3P17820_001	Banana	cytosol	51.88	46.23
Os05t0123200-01	Rice	plasma membrane	50.94	45.78
Solyc09g007410.2.1	Tomato	cytosol	51.88	45.76
CDY07937	Canola	nucleus	51.17	45.61
KXG21175	Sorghum	cytosol	49.77	44.82
TraesCS1A01G064100.1	Wheat	cytosol	50.47	44.79
TraesCS1B01G082100.1	Wheat	cytosol	50.47	44.79
TraesCS1D01G064700.1	Wheat	cytosol	50.23	44.77
HORVU1Hr1G013210.1	Barley	cytosol	50.47	44.42
Zm00001d035492_P009	Maize	cytosol	49.53	44.33
Zm00001d010975_P003	Maize	cytosol	49.3	43.93
CDY41307	Canola	cytosol	55.4	43.14
GSMUA_Achr7P22680_001	Banana	cytosol	46.48	42.58
CDY22198	Canola	cytosol	55.63	42.4
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	45.07	41.83
CDX95328	Canola	cytosol	43.66	41.8
CDY23202	Canola	cytosol	43.19	41.35
GSMUA_Achr7P18240_001	Banana	cytosol	45.77	41.31
GSMUA_Achr10P...	Banana	cytosol	39.44	39.81
TraesCS3D01G543500.1	Wheat	cytosol	45.77	39.31
Os01t0833800-01	Rice	plasma membrane	44.37	37.8
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	46.01	37.26
KXG33651	Sorghum	cytosol	43.43	37.15
TraesCS3D01G346500.1	Wheat	cytosol	43.43	37.07
TraesCS3B01G385100.1	Wheat	cytosol	43.43	37.07
TraesCS3A01G352500.1	Wheat	cytosol	43.43	37.07
HORVU3Hr1G087500.2	Barley	cytosol	43.19	36.87
GSMUA_Achr11P...	Banana	mitochondrion	39.67	36.58
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	45.54	36.53
Zm00001d042973_P007	Maize	cytosol	42.72	35.9
CDY17214	Canola	cytosol, plastid	21.6	34.72
CDY27925	Canola	plastid	21.36	34.34
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	46.95	34.25
CDY38525	Canola	cytosol	30.75	31.72
CDY62768	Canola	cytosol	19.95	30.69
CDY37387	Canola	cytosol	26.06	28.91
CDY32322	Canola	cytosol, plastid	17.37	28.57
CDX77034	Canola	cytosol	26.06	28.03
CDY35313	Canola	nucleus	26.06	27.96
CDY10618	Canola	cytosol	26.53	27.83
CDY24286	Canola	cytosol	26.29	27.72
CDY20099	Canola	cytosol	17.14	27.65
Os05t0463300-00	Rice	plasma membrane	32.39	27.49
CDX92933	Canola	cytosol, plastid	25.59	27.18
CDX96427	Canola	cytosol	15.49	27.16
HORVU1Hr1G071700.1	Barley	nucleus	32.39	26.85
TraesCS1D01G287100.2	Wheat	cytosol	33.1	26.65
CDX83237	Canola	cytosol	31.69	26.63
TraesCS1A01G288100.2	Wheat	nucleus	32.39	26.49
OQU78148	Sorghum	cytosol	34.04	25.89
CDY30433	Canola	cytosol	27.23	25.78
TraesCS1B01G297500.1	Wheat	cytosol	31.92	25.76
CDX72935	Canola	cytosol	15.73	25.48
CDY23391	Canola	cytosol	27.23	25.16
CDX92931	Canola	mitochondrion, nucleus	15.02	25.1
CDX71881	Canola	nucleus	28.64	24.7
CDY05984	Canola	nucleus	28.64	24.65
CDY15200	Canola	nucleus	28.64	23.87
CDX90011	Canola	nucleus	28.4	23.82
CDY39505	Canola	cytosol	22.07	23.8
CDY05917	Canola	mitochondrion, nucleus	26.29	23.58
CDY08120	Canola	mitochondrion, nucleus	26.06	23.42
CDY58749	Canola	cytosol	24.88	23.25
CDX86983	Canola	nucleus	25.82	23.16
CDY48305	Canola	nucleus	20.19	22.93
CDY26241	Canola	nucleus	20.19	22.93
CDY08131	Canola	nucleus	18.31	22.67
CDY00196	Canola	nucleus	25.12	22.53
CDY24282	Canola	mitochondrion	15.73	21.97
CDY05931	Canola	nucleus	17.84	21.59
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.63	21.38
CDY05111	Canola	nucleus	21.36	21.21
CDX91859	Canola	mitochondrion, nucleus	26.29	21.13
CDX79809	Canola	nucleus	29.58	21.07
CDY69140	Canola	mitochondrion, nucleus	25.82	20.95
CDX90766	Canola	nucleus	21.13	20.88
CDY66694	Canola	nucleus	29.34	20.87
CDX83468	Canola	plasma membrane	26.76	20.69
CDY05918	Canola	mitochondrion	15.02	20.38
CDY44247	Canola	nucleus	26.53	20.32
CDX96426	Canola	nucleus, plastid	3.52	14.71
CDX72934	Canola	nucleus, plastid	3.52	14.71

Protein Annotations

EnsemblPlants:CDX80849	EnsemblPlantsGene:GSBRNA2T00134244001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612	PFscan:PS50096	ProteinID:CDX80849
ProteinID:CDX80849.1	SEG:seg	SMART:SM00015	UniParc:UPI0004EB3EFB	MapMan:35.1	:

Description

BnaC03g01030D

Coordinates

chrLK031823:-:473157..475328

Molecular Weight (calculated)

47276.0 Da

IEP (calculated)

11.333

GRAVY (calculated)

-0.922

Length

426 amino acids

Sequence
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKHKSPDSP NGLISNPPPP PPPLEVEVVV DRYSNLSPPS TDAVNVDIPV VVVPSSSAPP EVVRRRRRAT ATRFAGKSNE
101: EAASILIQTV FRGYLARRAL RAMRGLVRLK LLMEGSVVKR QAANTLKCMQ TLSRVQSQIR ARRIRMSEEN QARQKQLLQK HAKELAGLKN GDNWDDSIQS
201: KEKVEAKLLS KYEATMRRER ALAYAYSHQQ NWKNNSKSGN PMFMDPSNPT WGWSWLERWM AGRPLEEPNN DTKSINRKNS TQPNTPSSAR GGTTPRNKNS
301: FFSPPTPSRL NHSSRKSKDE DDAKSTISVL SERNRRHSIA GSSVRDDESL AGSQTLPSYM VPTKSARARV NKPQSPSSGS TRQQDGDKAS AKKRLSYPSS
401: PALPKPRRFS APPKVEVGVT NNGVGS

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.