Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033443.1-P | Field mustard | cytosol | 97.75 | 97.75 |
| CDY23202 | Canola | cytosol | 97.53 | 97.53 |
| AT3G52290.1 | Thale cress | cytosol | 78.65 | 81.4 |
| KRH57858 | Soybean | cytosol | 49.89 | 48.9 |
| KRH04761 | Soybean | cytosol | 51.01 | 47.0 |
| CDY11238 | Canola | cytosol, plastid | 41.8 | 45.04 |
| CDX80849 | Canola | cytosol, plastid | 41.8 | 43.66 |
| CDY04876 | Canola | nucleus, plastid | 42.7 | 42.7 |
| CDY10410 | Canola | cytosol, plastid | 42.47 | 42.57 |
| CDY55696 | Canola | nucleus, plastid | 40.9 | 41.65 |
| KRG91856 | Soybean | cytosol | 45.39 | 41.31 |
| KRH34906 | Soybean | cytosol | 44.72 | 41.2 |
| CDX70333 | Canola | cytosol | 41.8 | 38.75 |
| CDY38525 | Canola | cytosol | 34.38 | 37.05 |
| CDX83237 | Canola | cytosol | 36.85 | 32.35 |
| CDY27925 | Canola | plastid | 18.43 | 30.94 |
| CDY17214 | Canola | cytosol, plastid | 18.43 | 30.94 |
| CDY07937 | Canola | nucleus | 32.13 | 29.92 |
| CDX73992 | Canola | nucleus | 31.69 | 29.56 |
| CDY37387 | Canola | cytosol | 25.39 | 29.43 |
| CDY22198 | Canola | cytosol | 35.28 | 28.09 |
| CDY10618 | Canola | cytosol | 25.62 | 28.08 |
| CDY32322 | Canola | cytosol, plastid | 16.18 | 27.8 |
| CDY62768 | Canola | cytosol | 17.3 | 27.8 |
| CDY41307 | Canola | cytosol | 34.16 | 27.79 |
| CDX77034 | Canola | cytosol | 24.72 | 27.78 |
| CDY35313 | Canola | nucleus | 24.72 | 27.71 |
| CDY24286 | Canola | cytosol | 24.72 | 27.23 |
| CDY20099 | Canola | cytosol | 15.73 | 26.52 |
| CDX92933 | Canola | cytosol, plastid | 23.82 | 26.43 |
| CDX96427 | Canola | cytosol | 14.16 | 25.93 |
| CDY05931 | Canola | nucleus | 20.22 | 25.57 |
| CDY05917 | Canola | mitochondrion, nucleus | 27.19 | 25.47 |
| CDY15200 | Canola | nucleus | 28.99 | 25.24 |
| CDY08120 | Canola | mitochondrion, nucleus | 26.74 | 25.11 |
| CDX90011 | Canola | nucleus | 28.54 | 25.0 |
| CDX72935 | Canola | cytosol | 14.61 | 24.71 |
| CDY08131 | Canola | nucleus | 19.1 | 24.71 |
| CDY05111 | Canola | nucleus | 23.6 | 24.48 |
| CDX86983 | Canola | nucleus | 25.84 | 24.21 |
| CDX90766 | Canola | nucleus | 23.37 | 24.13 |
| CDY00196 | Canola | nucleus | 25.39 | 23.79 |
| CDY30433 | Canola | cytosol | 24.04 | 23.78 |
| CDY05984 | Canola | nucleus | 26.07 | 23.43 |
| CDX71881 | Canola | nucleus | 25.84 | 23.28 |
| CDY23391 | Canola | cytosol | 23.82 | 22.99 |
| CDY39505 | Canola | cytosol | 20.22 | 22.78 |
| CDY58749 | Canola | cytosol | 23.15 | 22.59 |
| CDX91859 | Canola | mitochondrion, nucleus | 26.52 | 22.26 |
| CDY69140 | Canola | mitochondrion, nucleus | 26.07 | 22.1 |
| CDX92931 | Canola | mitochondrion, nucleus | 12.58 | 21.96 |
| CDY26241 | Canola | nucleus | 17.75 | 21.07 |
| CDY48305 | Canola | nucleus | 17.75 | 21.07 |
| CDX83468 | Canola | plasma membrane | 25.62 | 20.69 |
| CDY44247 | Canola | nucleus | 24.49 | 19.6 |
| CDY24282 | Canola | mitochondrion | 13.26 | 19.34 |
| CDX79809 | Canola | nucleus | 25.17 | 18.73 |
| CDY66694 | Canola | nucleus | 24.94 | 18.53 |
| CDY05918 | Canola | mitochondrion | 12.13 | 17.2 |
| CDX96426 | Canola | nucleus, plastid | 3.37 | 14.71 |
| CDX72934 | Canola | nucleus, plastid | 3.37 | 14.71 |
Protein Annotations
| EnsemblPlants:CDX95328 | EnsemblPlantsGene:GSBRNA2T00100997001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF28 | PFAM:PF00612 | PFscan:PS50096 |
| ProteinID:CDX95328 | ProteinID:CDX95328.1 | SEG:seg | SMART:SM00015 | UniParc:UPI0004EEC0C9 | MapMan:35.1 |
Description
BnaC04g28300D
Coordinates
chrLK031888:+:267772..269545
Molecular Weight (calculated)
49067.4 Da
IEP (calculated)
11.435
GRAVY (calculated)
-0.750
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSWFAVVK KAFTPRPKQT KDEQKPHKAK KWFGKSKKLD VTTPGVAGSL PSNTLCVARE AKLKEIEEEQ SRHAYSVAVA TAAAADAAVA AAQAAAEVVR
101: LTAVSRFPGK SKEDIAAIKI QTAFRGYMAR RALRALRGLV RLKSLVQGKG VRRQATSTLQ SMQTLARLQY QIRERRLRLS EDKQACARKL QQKHNKEFAK
201: IGGNWDDSTL SRERVEANML NKQVATMRRE KALAYAYTHQ NTWKSSSISQ TFMDPNNPHW GWSWLERWMA ARPNENQSVT LTPDTADKTS SAANSVASRA
301: RSEIIPRGRK PSPRRITPPS SRRMSSAGVR QAPSGDEDSK SRLSIQSEQP GNRRHSIGGS LPSTRDDESS IASSSVSQSV PGYMALTQAA KARARLSNLS
401: PLGLEKTAKK RLSFSDSPNK TLRRFSGPPK LESSGNNKSK DTVLA
101: LTAVSRFPGK SKEDIAAIKI QTAFRGYMAR RALRALRGLV RLKSLVQGKG VRRQATSTLQ SMQTLARLQY QIRERRLRLS EDKQACARKL QQKHNKEFAK
201: IGGNWDDSTL SRERVEANML NKQVATMRRE KALAYAYTHQ NTWKSSSISQ TFMDPNNPHW GWSWLERWMA ARPNENQSVT LTPDTADKTS SAANSVASRA
301: RSEIIPRGRK PSPRRITPPS SRRMSSAGVR QAPSGDEDSK SRLSIQSEQP GNRRHSIGGS LPSTRDDESS IASSSVSQSV PGYMALTQAA KARARLSNLS
401: PLGLEKTAKK RLSFSDSPNK TLRRFSGPPK LESSGNNKSK DTVLA
001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
Arabidopsis Description
IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.