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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • mitochondrion 4
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY05918 Canola mitochondrion 66.11 100.0
CDY08120 Canola mitochondrion, nucleus 95.58 95.78
AT3G49260.3 Thale cress nucleus 88.0 88.56
CDX86983 Canola nucleus 84.42 84.42
CDY00196 Canola nucleus 84.21 84.21
KRH53505 Soybean cytosol 47.79 50.9
VIT_16s0098g01790.t01 Wine grape cytosol, endoplasmic reticulum, nucleus 48.84 50.22
KRH64435 Soybean nucleus 47.79 49.03
KRH16503 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 47.16 48.91
PGSC0003DMT400023467 Potato nucleus 46.53 47.12
Solyc03g083100.2.1 Tomato nucleus 46.11 46.7
Solyc06g052010.1.1 Tomato cytosol 34.74 41.56
GSMUA_Achr10P... Banana cytosol 38.74 40.71
PGSC0003DMT400050471 Potato cytosol 34.53 40.29
CDX96427 Canola cytosol 14.53 28.4
CDY11238 Canola cytosol, plastid 23.79 27.36
CDY23202 Canola cytosol 25.47 27.19
CDX95328 Canola cytosol 25.47 27.19
CDX77034 Canola cytosol 22.53 27.02
CDY04876 Canola nucleus, plastid 25.05 26.74
CDY35313 Canola nucleus 22.32 26.7
CDX72935 Canola cytosol 14.74 26.62
CDX80849 Canola cytosol, plastid 23.58 26.29
CDX92933 Canola cytosol, plastid 22.11 26.18
CDY05931 Canola nucleus 19.37 26.14
CDY37387 Canola cytosol 21.05 26.04
CDY24286 Canola cytosol 22.11 25.99
CDY10618 Canola cytosol 21.89 25.62
CDY08131 Canola nucleus 18.53 25.58
CDY55696 Canola nucleus, plastid 23.37 25.4
CDY27925 Canola plastid 14.11 25.28
CDY17214 Canola cytosol, plastid 14.11 25.28
CDY48305 Canola nucleus 19.79 25.07
CDY26241 Canola nucleus 19.79 25.07
CDY10410 Canola cytosol, plastid 23.37 25.0
CDX70333 Canola cytosol 23.37 23.12
CDY62768 Canola cytosol 13.47 23.1
CDY38525 Canola cytosol 19.79 22.76
CDY39505 Canola cytosol 18.53 22.28
CDY15200 Canola nucleus 23.58 21.92
CDX90011 Canola nucleus 22.95 21.46
CDY32322 Canola cytosol, plastid 11.58 21.24
CDY69140 Canola mitochondrion, nucleus 23.37 21.14
CDX91859 Canola mitochondrion, nucleus 23.58 21.13
CDY58749 Canola cytosol 20.21 21.05
CDY05111 Canola nucleus 18.95 20.98
CDY20099 Canola cytosol 11.58 20.83
CDX90766 Canola nucleus 18.53 20.42
CDY05984 Canola nucleus 21.05 20.2
CDY23391 Canola cytosol 19.58 20.17
CDX71881 Canola nucleus 20.84 20.04
CDY30433 Canola cytosol 18.74 19.78
CDX83237 Canola cytosol 20.84 19.53
CDX92931 Canola mitochondrion, nucleus 9.26 17.25
CDX96426 Canola nucleus, plastid 3.58 16.67
CDX72934 Canola nucleus, plastid 3.58 16.67
CDX83468 Canola plasma membrane 18.74 16.15
CDX73992 Canola nucleus 16.0 15.93
CDY07937 Canola nucleus 16.0 15.9
CDX79809 Canola nucleus 20.0 15.89
CDY22198 Canola cytosol 18.32 15.56
CDY41307 Canola cytosol 17.89 15.54
CDY66694 Canola nucleus 19.58 15.53
CDY44247 Canola nucleus 18.11 15.47
CDY24282 Canola mitochondrion 9.68 15.08
Protein Annotations
EnsemblPlants:CDY05917EnsemblPlantsGene:GSBRNA2T00121724001Gene3D:1.20.5.190GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:DUF4005InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSncoils:CoilPANTHER:PTHR32295PANTHER:PTHR32295:SF33
PFAM:PF00612PFAM:PF13178PFscan:PS50096ProteinID:CDY05917ProteinID:CDY05917.1SEG:seg
SMART:SM00015UniParc:UPI0004EED59EMapMan:35.2:::
Description
BnaC08g20940D
Coordinates
chrLK031966:+:517684..521968
Molecular Weight (calculated)
52548.8 Da
IEP (calculated)
10.481
GRAVY (calculated)
-0.824
Length
475 amino acids
Sequence
(BLAST)
001: MGKKGSGGWF STVKKVFRSS PKDSKRENNI SNNTAVRWQQ QHDTQEVVSF ENFPAGSSPE ISHDVESTAS TPATTVGERK HALAVAIATA AAAEAAVAAA
101: QAAAKVVRLA GYNRQTEEDT AAVLIQSHYR GYLARRALRA LKGLVRLQAL VRGNHVRKQA QMTMKCMQAL VRVQGRVRAR RLQVAHDRFK KQFQEEERRS
201: GMEKPNIGST NLQTEREKPK KLHEVNRTSL YQTPGKEKEK SEGMMKRERA LAYAYTYQRQ MQHTYDDETI GFSVNGLDRT QWGWNWLDHW MSSQPYTGRQ
301: TGPGSSPGPG PYNPPPYPPF PTAAATTAGT TTPDDVSEKT VEMDVTTPTS LKDRIIGLTD REYIDFGSYR PAHKQRKSPS HIPSYMTPTA SAKAKVRDQD
401: TTVKIQGTSF MPYWNSSTKN GSINGSGCDS SSSGGVVATG YPGPRSPIPK MDFRKPVSPS QSPTGVGKRG WRHDL
Best Arabidopsis Sequence Match ( AT3G49260.1 )
(BLAST)
001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H
Arabidopsis Description
iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.