Factsheet for PGSC0003DMT400050471

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g052010.1.1	Tomato	cytosol	81.82	83.88
PGSC0003DMT400023467	Potato	nucleus	58.97	51.17
KRH53505	Soybean	cytosol	48.4	44.17
KRH64435	Soybean	nucleus	49.39	43.41
KRH16503	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	47.91	42.58
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	46.68	41.13
GSMUA_Achr10P...	Banana	cytosol	40.05	36.06
AT3G49260.3	Thale cress	nucleus	41.28	35.59
Bra017997.1-P	Field mustard	nucleus, plastid	40.29	34.53
CDY05917	Canola	mitochondrion, nucleus	40.29	34.53
CDY00196	Canola	nucleus	40.29	34.53
Bra019589.1-P	Field mustard	nucleus	40.05	34.32
CDX86983	Canola	nucleus	39.8	34.11
CDY08120	Canola	mitochondrion, nucleus	39.07	33.54
CDY05918	Canola	mitochondrion	21.13	27.39
PGSC0003DMT400010610	Potato	nucleus	27.76	24.57
PGSC0003DMT400045333	Potato	cytosol	28.26	24.42
PGSC0003DMT400027139	Potato	cytosol	28.26	23.91
PGSC0003DMT400004433	Potato	cytosol	27.03	22.92
PGSC0003DMT400021183	Potato	cytosol	23.83	22.35
PGSC0003DMT400031576	Potato	nucleus	26.78	21.98
PGSC0003DMT400006376	Potato	cytosol	21.13	20.14
PGSC0003DMT400039646	Potato	mitochondrion	14.25	19.59
PGSC0003DMT400068456	Potato	cytosol	14.25	19.08
PGSC0003DMT400059119	Potato	cytosol	14.25	18.83
PGSC0003DMT400041427	Potato	cytosol	23.1	17.57
PGSC0003DMT400038175	Potato	cytosol	21.87	17.21
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	21.62	14.26
PGSC0003DMT400029325	Potato	mitochondrion	10.81	13.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400050471	EnsemblPlantsGene:PGSC0003DMG400019610	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR32295	PANTHER:PTHR32295:SF33	PFAM:PF00612
PFscan:PS50096	PGSC:PGSC0003DMG400019610	SEG:seg	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI0002952A32
UniProt:M1BQB9	MapMan:35.2	:	:	:	:

Description

SF16 [Source:PGSC_GENE;Acc:PGSC0003DMG400019610]

Coordinates

chr6:+:38372854..38376570

Molecular Weight (calculated)

46359.3 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.940

Length

407 amino acids

Sequence
(BLAST)

001: MGKKGSGSWF STVKKVFIKP SSKDYSPADH KKKEKLENQW QDEAPEVEQF PAESSSDLTN NRESNDNSSS SLAEDRNHDI HVIEASVAVA TYTAPKIVKL
101: DGYNKEEIAA TLIQSYYRGY LARRALRALR GLVKLQALVR GHSVRKQAQI TMRCMQALVR VQSKVRARRL QLLQSKVEEV KLHSIIREDQ HKNKSLSNKQ
201: ETEGWDNRNQ SIEKILQNTR RKQHAYQKWL HSDPDDDEEC FCNEHENPQQ SWNWLDRWMA SQHAVRREGS YVSLSITDDI SEKTVELDPL GSEDVNLAHH
301: ILSPVERSPY SSTQSNMDSV PSYMAPTKSA KAKIRSPGPI KPKSPPGVAQ WNATPKKVTA RRWSYDSSAR SPNPKTSAKW MATYSPETRV HDRASPMGAP
401: ACRYNYN

Best Arabidopsis Sequence Match ( AT3G49260.1 )
(BLAST)

001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H

Arabidopsis Description

iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.