Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001405 | |
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03040.1 | PGSC0003DMT400001405 | AT3G27960.1 | 21798944 |
| AT5G03040.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT5G03040.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g007410.2.1 | Tomato | cytosol | 96.25 | 95.65 |
| PGSC0003DMT400027139 | Potato | cytosol | 80.62 | 80.46 |
| PGSC0003DMT400045333 | Potato | cytosol | 76.46 | 77.92 |
| VIT_08s0040g02360.t01 | Wine grape | nucleus | 62.92 | 63.05 |
| KRG95941 | Soybean | nucleus | 62.29 | 62.68 |
| KRH67648 | Soybean | nucleus | 61.25 | 61.64 |
| KRH19825 | Soybean | cytosol | 59.58 | 60.85 |
| KRH32420 | Soybean | cytosol | 59.79 | 60.55 |
| PGSC0003DMT400010610 | Potato | nucleus | 56.25 | 58.7 |
| GSMUA_Achr10P... | Banana | nucleus | 52.08 | 55.56 |
| GSMUA_Achr3P17820_001 | Banana | cytosol | 55.21 | 55.44 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 52.29 | 54.68 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 52.08 | 53.76 |
| CDY11238 | Canola | cytosol, plastid | 45.62 | 53.03 |
| CDX80849 | Canola | cytosol, plastid | 46.46 | 52.35 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 49.17 | 51.19 |
| KXG21175 | Sorghum | cytosol | 50.42 | 51.16 |
| Os05t0123200-01 | Rice | plasma membrane | 50.42 | 51.05 |
| TraesCS1A01G064100.1 | Wheat | cytosol | 51.04 | 51.04 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 51.46 | 51.03 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 50.62 | 50.84 |
| Zm00001d010975_P003 | Maize | cytosol | 50.21 | 50.42 |
| TraesCS1B01G082100.1 | Wheat | cytosol | 50.42 | 50.42 |
| Zm00001d035492_P009 | Maize | cytosol | 49.79 | 50.21 |
| CDY04876 | Canola | nucleus, plastid | 46.25 | 49.89 |
| GSMUA_Achr10P... | Banana | cytosol | 43.75 | 49.76 |
| Bra028854.1-P | Field mustard | nucleus, plastid | 46.04 | 49.66 |
| CDY55696 | Canola | nucleus, plastid | 45.21 | 49.66 |
| Os01t0833800-01 | Rice | plasma membrane | 51.46 | 49.4 |
| TraesCS3A01G352500.1 | Wheat | cytosol | 50.83 | 48.9 |
| TraesCS3B01G385100.1 | Wheat | cytosol | 50.83 | 48.9 |
| HORVU3Hr1G087500.2 | Barley | cytosol | 50.83 | 48.9 |
| TraesCS3D01G346500.1 | Wheat | cytosol | 50.83 | 48.9 |
| CDY10410 | Canola | cytosol, plastid | 45.21 | 48.87 |
| KXG33651 | Sorghum | cytosol | 50.62 | 48.8 |
| Zm00001d042973_P007 | Maize | cytosol | 51.04 | 48.32 |
| GSMUA_Achr11P... | Banana | mitochondrion | 45.21 | 46.97 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 44.58 | 45.34 |
| Bra009554.1-P | Field mustard | cytosol | 44.17 | 45.01 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 46.46 | 44.96 |
| CDX70333 | Canola | cytosol | 44.58 | 44.58 |
| TraesCS3B01G603500.1 | Wheat | cytosol, mitochondrion | 46.88 | 42.78 |
| AT3G09710.2 | Thale cress | nucleus | 41.46 | 42.52 |
| TraesCS3A01G538100.1 | Wheat | cytosol, mitochondrion | 46.25 | 41.81 |
| Bra034081.1-P | Field mustard | nucleus | 37.5 | 40.54 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 46.67 | 38.36 |
| Bra001299.1-P | Field mustard | nucleus | 35.83 | 36.36 |
| CDX73992 | Canola | nucleus | 35.42 | 35.64 |
| CDY07937 | Canola | nucleus | 34.38 | 34.52 |
| HORVU1Hr1G071700.1 | Barley | nucleus | 35.83 | 33.46 |
| CDY41307 | Canola | cytosol | 37.92 | 33.27 |
| TraesCS1D01G287100.2 | Wheat | cytosol | 36.25 | 32.89 |
| TraesCS1A01G288100.2 | Wheat | nucleus | 35.62 | 32.82 |
| CDY22198 | Canola | cytosol | 38.12 | 32.74 |
| TraesCS1B01G297500.1 | Wheat | cytosol | 34.79 | 31.63 |
| Os05t0463300-00 | Rice | plasma membrane | 32.92 | 31.47 |
| PGSC0003DMT400041427 | Potato | cytosol | 34.17 | 30.65 |
| PGSC0003DMT400068456 | Potato | cytosol | 19.17 | 30.26 |
| PGSC0003DMT400023467 | Potato | nucleus | 29.38 | 30.06 |
| PGSC0003DMT400039646 | Potato | mitochondrion | 18.33 | 29.73 |
| OQU78148 | Sorghum | cytosol | 34.58 | 29.64 |
| PGSC0003DMT400021183 | Potato | cytosol | 26.67 | 29.49 |
| PGSC0003DMT400059119 | Potato | cytosol | 18.12 | 28.25 |
| PGSC0003DMT400050471 | Potato | cytosol | 22.92 | 27.03 |
| PGSC0003DMT400031576 | Potato | nucleus | 26.88 | 26.01 |
| Zm00001d038395_P005 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 33.75 | 24.92 |
| PGSC0003DMT400006376 | Potato | cytosol | 22.08 | 24.82 |
| PGSC0003DMT400042121 | Potato | cytosol, mitochondrion | 29.58 | 23.01 |
| PGSC0003DMT400029325 | Potato | mitochondrion | 15.42 | 22.29 |
| PGSC0003DMT400038175 | Potato | cytosol | 23.54 | 21.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004433 | EnsemblPlantsGene:PGSC0003DMG400001768 | EntrezGene:102585211 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF28 | PFAM:PF00612 | PFscan:PS50096 |
| PGSC:PGSC0003DMG400001768 | RefSeq:XP_006361787.1 | RefSeq:XP_006361788.1 | SEG:seg | SMART:SM00015 | UniParc:UPI000294B67E |
| UniProt:M0ZNF3 | MapMan:35.1 | : | : | : | : |
Description
Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001768]
Coordinates
chr9:+:6410662..6414989
Molecular Weight (calculated)
52974.5 Da
IEP (calculated)
10.804
GRAVY (calculated)
-0.798
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGSWFSS VKKALSPDPK EKADKKASKS KKKWFGKEKH TLPDSSTAVT ATASPPRPVP VPPVEEVKLE EVEEEQTKHA YSVAVATAAA AEAAVAAAHA
101: AAEVVRLTTV NQFSGKSQEE VAAVRVQTAF RGYLARRALR ALRGLVRLKS LVDGPTAKRQ TANALKCMQT LSRMQSQISS RRIRMLEENR ALQRQLMQKH
201: VKELESLRRG EEWDDSLQSK ERVEASLLSK YEAAIRRERA LAYSYSHQQT WKKSSRSTNL LFMDPTNPQW GWSWLERWTG ARPWESQSMS EKQLKTDQIS
301: VRSVSISGGE IAKSFARHQL NSELPSSPSS QKPSHPSGYH SPTTPSKPTT SVAAARKLKP ASPRISAMNQ DDDIRSMQSE QNRRHSIAGS SIRDDESLAS
401: SPSVPSYMAS TQSAKAKTRL QSPLGMENGT PEKGSAGSVK KRLSYPPSPA RPRRHSGPPK FDNTSLNTSI TEDHVNGVVN
101: AAEVVRLTTV NQFSGKSQEE VAAVRVQTAF RGYLARRALR ALRGLVRLKS LVDGPTAKRQ TANALKCMQT LSRMQSQISS RRIRMLEENR ALQRQLMQKH
201: VKELESLRRG EEWDDSLQSK ERVEASLLSK YEAAIRRERA LAYSYSHQQT WKKSSRSTNL LFMDPTNPQW GWSWLERWTG ARPWESQSMS EKQLKTDQIS
301: VRSVSISGGE IAKSFARHQL NSELPSSPSS QKPSHPSGYH SPTTPSKPTT SVAAARKLKP ASPRISAMNQ DDDIRSMQSE QNRRHSIAGS SIRDDESLAS
401: SPSVPSYMAS TQSAKAKTRL QSPLGMENGT PEKGSAGSVK KRLSYPPSPA RPRRHSGPPK FDNTSLNTSI TEDHVNGVVN
001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
Arabidopsis Description
iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.