Factsheet for PGSC0003DMT400031576

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083240.2.1	Tomato	nucleus	93.55	94.89
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	57.26	53.18
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	47.38	50.98
GSMUA_Achr1P16160_001	Banana	nucleus	45.16	50.0
GSMUA_Achr1P18950_001	Banana	nucleus	45.77	49.56
PGSC0003DMT400029325	Potato	mitochondrion	32.66	48.8
AT4G10640.1	Thale cress	nucleus	39.11	45.86
Os08t0115200-01	Rice	cytosol	50.2	45.86
Bra000717.1-P	Field mustard	nucleus	39.92	45.83
GSMUA_Achr6P02050_001	Banana	cytosol	14.31	45.81
CDX90766	Canola	nucleus	39.72	45.71
CDY05111	Canola	nucleus	39.31	45.45
HORVU7Hr1G075720.1	Barley	plasma membrane	48.99	44.51
TraesCSU01G104800.3	Wheat	nucleus	48.79	44.4
TraesCS7B01G218800.3	Wheat	nucleus	48.79	44.4
TraesCS7A01G317400.2	Wheat	nucleus	48.59	44.3
EES14418	Sorghum	cytosol	50.6	43.73
Zm00001d049684_P002	Maize	cytosol, mitochondrion	47.78	43.57
PGSC0003DMT400038175	Potato	cytosol	36.49	35.01
PGSC0003DMT400010610	Potato	nucleus	26.61	28.7
PGSC0003DMT400027139	Potato	cytosol	26.21	27.03
PGSC0003DMT400004433	Potato	cytosol	26.01	26.88
PGSC0003DMT400050471	Potato	cytosol	21.98	26.78
PGSC0003DMT400023467	Potato	nucleus	24.6	26.01
PGSC0003DMT400045333	Potato	cytosol	24.4	25.69
PGSC0003DMT400021183	Potato	cytosol	22.18	25.35
PGSC0003DMT400068456	Potato	cytosol	14.31	23.36
PGSC0003DMT400006376	Potato	cytosol	19.15	22.25
PGSC0003DMT400039646	Potato	mitochondrion	12.3	20.61
PGSC0003DMT400059119	Potato	cytosol	12.3	19.81
PGSC0003DMT400041427	Potato	cytosol	21.17	19.63
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	18.35	14.75

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:102586784	MapMan:35.2	ncoils:Coil	InterPro:DUF4005	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:M1AVV6	PFAM:PF00612	PFAM:PF13178
EnsemblPlantsGene:PGSC0003DMG400012115	PGSC:PGSC0003DMG400012115	EnsemblPlants:PGSC0003DMT400031576	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50
SMART:SM00015	UniParc:UPI000294B92C	RefSeq:XP_006343775.1	SEG:seg	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012115]

Coordinates

chr8:-:56711796..56714521

Molecular Weight (calculated)

56292.4 Da

IEP (calculated)

10.700

GRAVY (calculated)

-0.961

Length

496 amino acids

Sequence
(BLAST)

001: MGKKKGGTSW LSAVKRAFRS PTKDNSCDKK AKIEHELDED EEKKREKRRW LFRKQSQNEG KVIVDPKHAT AAAAVATAQA AVEIIRLTRS SNNPSSNRQH
101: NAAVLIQTAF RGYLARRALI ALKGIVKLQA LIRGQNVRKQ AKMTLKCMQA LLRVQARVRE QRARLSHDGG RRSMFAETTN LWDSKYLRDI RDRKSRSRDG
201: SSIADDCPRS LLELESMLQA RKEASFKREK SLAHAFTQQE LDEMDVCSEE RNERELEETA NWLDEWMSSK QWNTSNRGSF DRRDSIKTVE MDTAKPYSNM
301: VPNARRSQHS SPLHRQASSP HYIANSPHHQ RSSHYNYSAI QPPATPPPCQ PKPLQMRPTS PRKSQSTANT PCLRSTSRSN SIMSRYSTSG NDASVPNYMA
401: ATESAKARIR SQSTPKQRPS TPERERVGSV KKRLSYPIPE PYSLNAAYGY SQNLRSPSFK SLQAAYVGME QQSCYTDSLG GEISPCSTTD LRRWLR

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.