Factsheet for PGSC0003DMT400039646

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014130.1.1	Tomato	nucleus	83.45	94.64
AT3G15050.1	Thale cress	plastid	40.88	46.72
CDY20099	Canola	cytosol	41.55	46.59
CDY32322	Canola	cytosol, plastid	40.54	46.33
VIT_19s0014g01690.t01	Wine grape	cytosol	48.31	46.28
Bra021588.1-P	Field mustard	cytosol, plastid	41.22	46.21
PGSC0003DMT400068456	Potato	cytosol	46.96	45.72
KRH55128	Soybean	mitochondrion, nucleus	44.26	44.26
KRH27315	Soybean	cytosol	42.57	42.86
GSMUA_Achr6P14440_001	Banana	nucleus	23.65	40.94
PGSC0003DMT400059119	Potato	cytosol	42.57	40.91
GSMUA_Achr2P20050_001	Banana	nucleus	39.53	39.53
KRH22000	Soybean	plastid	44.59	38.48
HORVU7Hr1G024060.1	Barley	plastid	22.64	38.07
EER87873	Sorghum	nucleus	41.22	36.64
Zm00001d045305_P001	Maize	nucleus	40.2	35.52
HORVU7Hr1G023980.1	Barley	nucleus	38.85	35.17
TraesCS7D01G107600.2	Wheat	nucleus	38.85	35.17
TraesCS7A01G112000.1	Wheat	nucleus	38.85	35.17
TraesCS7B01G010100.1	Wheat	nucleus	37.84	34.25
Os06t0155300-01	Rice	plasma membrane	39.86	33.43
Zm00001d009320_P001	Maize	nucleus	19.93	25.54
PGSC0003DMT400010610	Potato	nucleus	29.05	18.7
PGSC0003DMT400021183	Potato	cytosol	27.36	18.66
PGSC0003DMT400006376	Potato	cytosol	26.69	18.5
PGSC0003DMT400004433	Potato	cytosol	29.73	18.33
PGSC0003DMT400045333	Potato	cytosol	28.72	18.05
PGSC0003DMT400027139	Potato	cytosol	29.05	17.88
PGSC0003DMT400023467	Potato	nucleus	24.32	15.35
PGSC0003DMT400041427	Potato	cytosol	27.7	15.33
PGSC0003DMT400050471	Potato	cytosol	19.59	14.25
PGSC0003DMT400029325	Potato	mitochondrion	14.86	13.25
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	26.69	12.8
PGSC0003DMT400031576	Potato	nucleus	20.61	12.3
PGSC0003DMT400038175	Potato	cytosol	18.58	10.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400039646	EnsemblPlantsGene:PGSC0003DMG400015332	EntrezGene:102592955	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF93	PFAM:PF00612
PFscan:PS50096	PGSC:PGSC0003DMG400015332	RefSeq:XP_006358993.1	SEG:seg	UniParc:UPI0002966419	UniProt:M1B8K6
MapMan:35.1	:	:	:	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015332]

Coordinates

chr12:-:341772..347268

Molecular Weight (calculated)

33770.5 Da

IEP (calculated)

11.138

GRAVY (calculated)

-0.756

Length

296 amino acids

Sequence
(BLAST)

001: MGFCLKTIIG LKRNKRRKSK QLKVTSTSTS DEPNGEVQVP SAHYSNGTSS SKKITRKTKF THNTAATKIQ TAFRAHLARK ALRRVRGAVR FQGVIEGLSV
101: NNQIAGTLKQ IHCWSKIQSE IRARRLNMVT QGHNKQKKIQ NQQKLEAKLH ELEVEWSSSA ETIEEILQKL QQREEAAIKR ERAMAYAFSH QWRANSNQYF
201: GQAYYDLGKE SWGWSWMERW IAVRPWETRV QTNPIVPKIS HSQQVAKITS KATNLGPMKL VVSIKNLSIS NGKESTKGRK LSITTNENQV SQETNI

Best Arabidopsis Sequence Match ( AT3G15050.1 )
(BLAST)

001: MGSGWLLRSI ICLNGTKKNK SNRGNVHSET SNRVKPVESS SAASTKLTVE VAVIRIQKAF RAFKARKRLC SLKSARRFNS LIQGHTVMNQ TSTALNVIHS
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG

Arabidopsis Description

IQD10IQ-domain 10 [Source:UniProtKB/TrEMBL;Acc:Q9LKA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.