Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g00860.t01 | Wine grape | cytosol, plastid | 58.9 | 59.48 |
| Solyc12g014130.1.1 | Tomato | nucleus | 43.69 | 51.72 |
| KRH55128 | Soybean | mitochondrion, nucleus | 48.54 | 50.68 |
| CDY32322 | Canola | cytosol, plastid | 42.07 | 50.19 |
| AT3G15050.1 | Thale cress | plastid | 42.07 | 50.19 |
| CDY20099 | Canola | cytosol | 42.39 | 49.62 |
| Bra021588.1-P | Field mustard | cytosol, plastid | 41.75 | 48.86 |
| GSMUA_Achr6P14440_001 | Banana | nucleus | 26.86 | 48.54 |
| PGSC0003DMT400039646 | Potato | mitochondrion | 46.28 | 48.31 |
| KRH27315 | Soybean | cytosol | 44.98 | 47.28 |
| GSMUA_Achr2P20050_001 | Banana | nucleus | 44.98 | 46.96 |
| HORVU7Hr1G024060.1 | Barley | plastid | 25.24 | 44.32 |
| EER87873 | Sorghum | nucleus | 45.95 | 42.64 |
| Zm00001d045305_P001 | Maize | nucleus | 45.31 | 41.79 |
| KRH22000 | Soybean | plastid | 45.63 | 41.11 |
| TraesCS7A01G112000.1 | Wheat | nucleus | 42.07 | 39.76 |
| TraesCS7B01G010100.1 | Wheat | nucleus | 42.07 | 39.76 |
| TraesCS7D01G107600.2 | Wheat | nucleus | 42.07 | 39.76 |
| HORVU7Hr1G023980.1 | Barley | nucleus | 42.07 | 39.76 |
| Os06t0155300-01 | Rice | plasma membrane | 44.01 | 38.53 |
| Zm00001d009320_P001 | Maize | nucleus | 22.98 | 30.74 |
| VIT_06s0009g00210.t01 | Wine grape | cytosol | 31.72 | 22.02 |
| VIT_13s0019g03890.t01 | Wine grape | cytosol | 33.01 | 21.16 |
| VIT_04s0008g01080.t01 | Wine grape | nucleus | 30.74 | 21.16 |
| VIT_08s0040g02360.t01 | Wine grape | nucleus | 31.72 | 20.46 |
| VIT_16s0098g01790.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 27.83 | 18.61 |
| VIT_02s0025g02690.t01 | Wine grape | mitochondrion, nucleus | 24.6 | 14.23 |
| VIT_15s0048g02680.t01 | Wine grape | nucleus | 24.6 | 13.64 |
| VIT_05s0094g00530.t01 | Wine grape | cytosol | 26.21 | 13.55 |
| VIT_16s0098g01070.t01 | Wine grape | mitochondrion, nucleus | 19.42 | 12.99 |
Protein Annotations
| EntrezGene:100253850 | wikigene:100253850 | MapMan:35.1 | EMBL:AM432649 | ProteinID:CAN67034 | ProteinID:CAN67034.1 |
| ProteinID:CBI20219 | ProteinID:CBI20219.3 | ncoils:Coil | UniProt:E0CSC0 | EMBL:FN595229 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | EntrezGene:LOC100253850 | wikigene:LOC100253850 |
| PFAM:PF00612 | PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF93 | SMART:SM00015 | UniParc:UPI00015C81FB |
| ArrayExpress:VIT_19s0014g01690 | EnsemblPlantsGene:VIT_19s0014g01690 | EnsemblPlants:VIT_19s0014g01690.t01 | RefSeq:XP_002282973 | RefSeq:XP_002282973.1 | RefSeq:XP_010644141.1 |
| RefSeq:XP_010644142.1 | RefSeq:XP_010644145.1 | RefSeq:XP_019072943.1 | RefSeq:XP_019072944.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:-:1809174..1810993
Molecular Weight (calculated)
35059.9 Da
IEP (calculated)
10.811
GRAVY (calculated)
-0.775
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGGWFKMI ISLRKVKEDR SKPAKVHSTT EKSSNSKGKH HIDKESSSLA NGALGKSAGV HKIPVEERAA IQIQTTYRAY KARKNLHRLR GTVRFQVMTQ
101: GDIVRKQAST TLSYIHAWSR IQAQISARRH CMAQEGRVRQ KKLENQLKLE AKLHELEVEW CGGSETMEEI LSRIQQREEA AVKRERAMAY AFSHQWRANN
201: SQYLGHTYYD LGKENWGWSW MERWIAARPW ETRVHAQSTL PKKAQTKHVI KVGKITNPQT MKTPVLVRPA LSNGKGTTKP AAQEAVTTAV SSSRSEAEEA
301: NTKHEQIIT
101: GDIVRKQAST TLSYIHAWSR IQAQISARRH CMAQEGRVRQ KKLENQLKLE AKLHELEVEW CGGSETMEEI LSRIQQREEA AVKRERAMAY AFSHQWRANN
201: SQYLGHTYYD LGKENWGWSW MERWIAARPW ETRVHAQSTL PKKAQTKHVI KVGKITNPQT MKTPVLVRPA LSNGKGTTKP AAQEAVTTAV SSSRSEAEEA
301: NTKHEQIIT
001: MGSGWLLRSI ICLNGTKKNK SNRGNVHSET SNRVKPVESS SAASTKLTVE VAVIRIQKAF RAFKARKRLC SLKSARRFNS LIQGHTVMNQ TSTALNVIHS
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
Arabidopsis Description
IQD10IQ-domain 10 [Source:UniProtKB/TrEMBL;Acc:Q9LKA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.