Factsheet for VIT_13s0019g03890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050050.2.1	Tomato	cytosol	61.41	75.13
PGSC0003DMT400010610	Potato	nucleus	68.67	71.96
VIT_08s0040g02360.t01	Wine grape	nucleus	68.26	68.68
CDY38525	Canola	cytosol	36.93	43.1
CDX83237	Canola	cytosol	39.0	37.08
AT2G26410.2	Thale cress	cytosol	39.63	36.24
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	21.58	33.99
VIT_19s0014g01690.t01	Wine grape	cytosol	21.16	33.01
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	30.71	32.03
VIT_04s0008g01080.t01	Wine grape	nucleus	29.25	31.4
VIT_05s0094g00530.t01	Wine grape	cytosol	38.8	31.27
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	29.67	30.95
VIT_15s0048g02680.t01	Wine grape	nucleus	35.68	30.88
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	33.61	30.34
VIT_06s0009g00210.t01	Wine grape	cytosol	27.39	29.66

Protein Annotations

EntrezGene:100256490	wikigene:100256490	MapMan:35.1	EMBL:AM424825	ProteinID:CAN66644	ProteinID:CAN66644.1
ProteinID:CCB56207	ProteinID:CCB56207.1	ncoils:Coil	UniProt:F6HNI8	EMBL:FN595998	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100256490	wikigene:LOC100256490
PFAM:PF00612	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	SMART:SM00015	TIGR:TC66841
UniParc:UPI0001984761	ArrayExpress:VIT_13s0019g03890	EnsemblPlantsGene:VIT_13s0019g03890	EnsemblPlants:VIT_13s0019g03890.t01	unigene:Vvi.16458	RefSeq:XP_002277282
RefSeq:XP_002277282.1	RefSeq:XP_010658434.1	RefSeq:XP_010658437.1	RefSeq:XP_019080140.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:5123720..5128026

Molecular Weight (calculated)

53029.8 Da

IEP (calculated)

11.111

GRAVY (calculated)

-0.830

Length

482 amino acids

Sequence
(BLAST)

001: MGKKGNWFSA VKKALSPEPK EKKDKTTPKS KKKWFGKHKN LDPVSSSTEN AMPLPAPAPP IEDVKLTEAE NEQSKHAYSV ALATAVAAEA AVAAAHAAAE
101: VVRLTTVTRF SGKSKEEVAA IKIQTAFRGY LARRALRALR GLVRLKSLIQ GQSVKRQATT TLRCMQTLAR VQSQIRARRI RMSEENLALQ RQLQLKRDKE
201: LEKLRASMGD DWDDSVQSKE QIEANLQSKQ EAAVRRERAL AYAFSHQQTW KNSSKPANPT FMDPNNPHWG WSWLERWMAA RPWESRSAME KELNTDHASL
301: KSTTSRAFSI GEISKAYARR DLNLDKKPSP TAQKPSRPPS RQSPSTPPSK AQSSSSVTGK TKPASPKGSG WGADDDSRSM LSIQSERYRR HSIAGSLVRD
401: DESLASSPAV PSYMASTEST RARSRLPSPL GLEKNGTPEK ASGSSAKKRL SFPASPAGPR RHSGPPRVET SSIKAISPAH RG

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.