Factsheet for VIT_05s0094g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50198	Soybean	cytosol	59.2	66.42
KRH71267	Soybean	cytosol	59.36	66.36
Solyc08g014280.2.1	Tomato	cytosol	53.85	59.74
PGSC0003DMT400041427	Potato	cytosol	53.18	59.44
CDY05984	Canola	nucleus	48.49	58.59
Bra007471.1-P	Field mustard	nucleus	48.49	58.47
CDX71881	Canola	nucleus	48.16	58.3
AT3G59690.2	Thale cress	nucleus	48.33	55.9
CDY30433	Canola	cytosol	41.14	54.67
CDY23391	Canola	cytosol	42.14	54.66
GSMUA_Achr7P02870_001	Banana	mitochondrion	24.75	49.17
Solyc06g053450.2.1	Tomato	nucleus	48.66	49.16
GSMUA_Achr8P32220_001	Banana	cytosol	35.62	48.74
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	49.16	47.65
Bra037689.1-P	Field mustard	cytosol	41.97	47.63
CDX83468	Canola	plasma membrane	43.31	47.01
CDX79809	Canola	nucleus	46.66	46.66
CDY44247	Canola	nucleus	43.31	46.58
Bra000318.1-P	Field mustard	nucleus	45.99	46.22
CDY66694	Canola	nucleus	46.15	46.08
Bra004776.1-P	Field mustard	nucleus	46.66	44.64
AT2G43680.1	Thale cress	nucleus	48.16	43.05
Os01t0896200-01	Rice	mitochondrion	22.91	40.65
VIT_13s0019g03890.t01	Wine grape	cytosol	31.27	38.8
EES01898	Sorghum	cytosol	35.95	38.19
Zm00001d012167_P001	Maize	cytosol	35.45	36.68
VIT_08s0040g02360.t01	Wine grape	nucleus	28.09	35.07
HORVU3Hr1G089690.1	Barley	cytosol	34.78	33.12
TraesCS3D01G392900.1	Wheat	cytosol	34.45	33.12
TraesCS3B01G431200.1	Wheat	cytosol	34.62	33.07
TraesCS3A01G398900.1	Wheat	cytosol	34.11	32.74
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	14.55	28.43
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	20.74	26.84
VIT_19s0014g01690.t01	Wine grape	cytosol	13.55	26.21
VIT_06s0009g00210.t01	Wine grape	cytosol	18.9	25.39
VIT_15s0048g02680.t01	Wine grape	nucleus	23.41	25.13
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	22.24	24.91
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	18.73	24.24
VIT_04s0008g01080.t01	Wine grape	nucleus	17.06	22.72

Protein Annotations

EntrezGene:100266234	wikigene:100266234	MapMan:20.6.2	EMBL:AM451838	ProteinID:CAN69895	ProteinID:CAN69895.1
ProteinID:CCB49381	ProteinID:CCB49381.1	InterPro:DUF4005	UniProt:F6HB11	EMBL:FN595507	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100266234	wikigene:LOC100266234
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18	SMART:SM00015
UniParc:UPI00021095B2	ArrayExpress:VIT_05s0094g00530	EnsemblPlantsGene:VIT_05s0094g00530	EnsemblPlants:VIT_05s0094g00530.t01	unigene:Vvi.7705	RefSeq:XP_002276507
RefSeq:XP_002276507.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:23888940..23894081

Molecular Weight (calculated)

66778.6 Da

IEP (calculated)

11.402

GRAVY (calculated)

-0.749

Length

598 amino acids

Sequence
(BLAST)

001: MDRLAIQNLK VYRKEEKGWL IFISPPPAPL LLVASAFSES GFSRVSTVLP SQGFPRCDGK AQNMGKKGSW FSAIKRVFIP NSKEKLVNGT ERKNAKEKKK
101: KGRDTHSFIP LFREPSSIEK ILGDAEREQQ NKIFLRPPTP SETPKVPTPV PPRVSSPRVT SPRAAASPRA AASPRAVASP RAVASPRAAA SPRAASPRAF
201: HHHKEVSYRP EPTLRNHHIA AIRIQTAYRG YMARRSFRAL RGLVRLQGVV RGQNVKRQTT NAMKCMQLLV RVQSQIQSRR IQMLENQALQ RQSQYKNDKE
301: LESSIGKWAS SQPSEAGNNE DWDDSQLTKE QIEARLQKKV EAVIKRERAM AYAYSHQLWK ATPKSAQASI MDIRSGGFPW WWNWLERQLP PANPPESQAT
401: KSILLTPTRP TPDLRPSPRP QASNYRQQSF GFDNLESLTP KSSKSAVPAR AKTPPNRVPQ ANGSNLSRYP KPRASAADST FDVPLRDDDS LTSCPPFSVP
501: NYMTPTVSAK AKVRANSNPK ERYPVTPSAE SKRRLSFPLG QGIGSFKWNK GTLFSSKDST SQRVIERHQS LQSTGNLSVD STVSLPATVG RKPFNRFV

Best Arabidopsis Sequence Match ( AT3G59690.1 )
(BLAST)

001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA

Arabidopsis Description

IQD13IQ-domain 13 [Source:UniProtKB/TrEMBL;Acc:Q9M199]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.