Factsheet for VIT_06s0009g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071840.1.1	Tomato	cytosol	66.97	66.52
KRH22612	Soybean	cytosol	61.12	64.0
KRH26707	Soybean	cytosol	60.45	63.74
CDY37387	Canola	cytosol	54.16	62.76
Bra031331.1-P	Field mustard	cytosol	53.71	62.24
KRH39086	Soybean	cytosol	59.78	61.29
AT3G22190.2	Thale cress	cytosol	57.53	60.66
CDY10618	Canola	cytosol	54.61	59.85
CDY24286	Canola	cytosol	53.71	59.16
CDX92933	Canola	cytosol, plastid	53.26	59.1
GSMUA_Achr4P31410_001	Banana	cytosol	55.51	56.14
GSMUA_Achr5P02600_001	Banana	cytosol	54.83	55.58
Bra001855.1-P	Field mustard	cytosol	42.47	55.1
GSMUA_Achr4P22800_001	Banana	cytosol	53.26	54.61
CDY39505	Canola	cytosol	47.87	53.92
CDX92931	Canola	mitochondrion, nucleus	30.56	53.33
CDY58749	Canola	cytosol	52.58	51.32
Bra023846.1-P	Field mustard	cytosol	47.42	50.6
Os03t0787200-01	Rice	cytosol	46.74	49.29
TraesCS5B01G427800.1	Wheat	cytosol, mitochondrion	47.42	49.07
Os12t0619000-01	Rice	cytosol	48.09	48.42
TraesCS5A01G425800.1	Wheat	cytosol, mitochondrion	46.74	48.37
EER90769	Sorghum	mitochondrion	47.42	47.95
TraesCSU01G076200.1	Wheat	cytosol, mitochondrion	45.62	47.21
Zm00001d034366_P003	Maize	mitochondrion	47.42	47.2
KXG24027	Sorghum	cytosol	46.29	46.82
CDY24282	Canola	mitochondrion	31.69	46.23
HORVU5Hr1G007780.1	Barley	cytosol	44.27	45.92
TraesCS5D01G037300.2	Wheat	nucleus	44.04	45.58
TraesCS5A01G029600.3	Wheat	nucleus	44.27	45.39
Os03t0648300-01	Rice	cytosol	43.15	43.64
TraesCS5B01G028200.1	Wheat	nucleus	43.37	43.57
HORVU5Hr1G092660.2	Barley	nucleus	41.12	41.78
EER91163	Sorghum	cytosol	39.55	41.71
TraesCS5B01G375000.1	Wheat	nucleus	40.67	41.51
TraesCS5A01G373000.1	Wheat	nucleus	40.67	41.51
Zm00001d033211_P002	Maize	cytosol	39.78	41.26
Zm00001d031098_P004	Maize	cytosol	46.74	41.19
TraesCS5D01G382500.1	Wheat	nucleus	40.45	41.1
Zm00001d013112_P011	Maize	mitochondrion	44.94	39.68
VIT_04s0008g01080.t01	Wine grape	nucleus	36.4	36.08
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	23.6	34.31
VIT_19s0014g01690.t01	Wine grape	cytosol	22.02	31.72
VIT_13s0019g03890.t01	Wine grape	cytosol	29.66	27.39
VIT_08s0040g02360.t01	Wine grape	nucleus	28.76	26.72
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	25.84	24.89
VIT_15s0048g02680.t01	Wine grape	nucleus	28.76	22.98
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	27.42	22.85
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	23.15	22.29
VIT_05s0094g00530.t01	Wine grape	cytosol	25.39	18.9

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100264099	wikigene:100264099	MapMan:35.2	ProteinID:CCB49213	ProteinID:CCB49213.1
UniProt:F6HAF1	EMBL:FN595504	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS
EntrezGene:LOC100264099	wikigene:LOC100264099	PFAM:PF00612	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF12
SMART:SM00015	UniParc:UPI0002107EE8	ArrayExpress:VIT_06s0009g00210	EnsemblPlantsGene:VIT_06s0009g00210	EnsemblPlants:VIT_06s0009g00210.t01	RefSeq:XP_002265745
RefSeq:XP_002265745.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:10154779..10173716

Molecular Weight (calculated)

49178.0 Da

IEP (calculated)

10.828

GRAVY (calculated)

-0.789

Length

445 amino acids

Sequence
(BLAST)

001: MHSFDLFVQN PSCNGRKWIK ALVGLKKSEK SQSSEKDENR TAAGSKFWHR RKHSVEINTD LLQVELDQNA APPVEDTDLN SVPDPAGSPS GSNQAQDAVQ
101: VQQNVREEWA ATYIQTAFRG FLARRALRAL KGLVRLQALV RGHAVRKQAA ITLRCMQALV RVQARVRARR VRLALESQTA QQKLQLQLAN EARVREIEEG
201: WCDSVGSVED IQAKLLKRQE AAAKRERAMA YALAHQWQAG SRQQAAPSEF EPDKSNWGWN WLERWMAVRP WENRFLDINL RDGVMIRENG STEGKNGSKT
301: QSKSAGKKPI SLNLSNQKMG PSNSDGGSSS PTKSAMFQEA SSTVSAKPKS KPILEDLAEE ANSRPGVGSR SHSNPKERST LQDKQAKKRL SLPNSGIGSG
401: AQATRQQSRS VLKKAASAQK PIKDNSKVNI KGDLETTKST SVSDL

Best Arabidopsis Sequence Match ( AT3G22190.1 )
(BLAST)

001: MGASGRWIKA LVGFTKSDKS RSSKKDENVK VATKSRFGRK NSVDFDFEKF QDGFEDSNTR SMVDTGVSTS TSLQSYGGVA YDEQSRENRA ATRIQTAYRG
101: FLARRALRAL KGLVRLQALV RGHAVRKQAA VTLRCMQALV RVQARVRARR VRLALELESE TSQQTLQQQL ADEARVREIE EGWCDSIGSV EQIQAKLLKR
201: QEAAAKRERA MAYALTHQWQ AGTRLLSAHS GFQPDKNNWG WNWLERWMAV RPWENRFLDS NLRDDAKLGE NGMEQSENVP KTQIKSVSKM PNTSNLVSGV
301: SSQMTGPCQS DGDSSSPGIS SSIPVVSKAK SKPAKDDLAV EVNSRPGAGP RSHSNPKERS REPNRSSKER LSLPNSGKSL GSQSTKANRA GKLTPASQKV
401: VEEKSAQNQR RRNSDPIKQR LA

Arabidopsis Description

IQD5IQD5 [Source:UniProtKB/TrEMBL;Acc:A0A178VHN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.