Factsheet for VIT_02s0025g02690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02680.t01	Wine grape	nucleus	64.61	61.94
GSMUA_Achr1P18950_001	Banana	nucleus	51.87	60.48
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	52.06	60.3
GSMUA_Achr1P16160_001	Banana	nucleus	48.13	57.37
PGSC0003DMT400031576	Potato	nucleus	53.18	57.26
Solyc08g083240.2.1	Tomato	nucleus	51.69	56.44
GSMUA_Achr6P02050_001	Banana	cytosol	16.1	55.48
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	46.82	54.11
Os08t0115200-01	Rice	cytosol	54.12	53.22
HORVU7Hr1G075720.1	Barley	plasma membrane	54.31	53.11
TraesCS7A01G317400.2	Wheat	nucleus	53.93	52.94
TraesCSU01G104800.3	Wheat	nucleus	53.93	52.84
TraesCS7B01G218800.3	Wheat	nucleus	53.75	52.66
EES14418	Sorghum	cytosol	52.62	48.95
Zm00001d049684_P002	Maize	cytosol, mitochondrion	49.25	48.35
Bra000717.1-P	Field mustard	nucleus	38.58	47.69
CDX90766	Canola	nucleus	38.39	47.56
AT4G10640.1	Thale cress	nucleus	37.64	47.52
CDY05111	Canola	nucleus	36.89	45.92
VIT_13s0019g03890.t01	Wine grape	cytosol	30.34	33.61
VIT_08s0040g02360.t01	Wine grape	nucleus	28.09	31.32
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	17.04	29.74
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	25.28	29.22
VIT_06s0009g00210.t01	Wine grape	cytosol	22.85	27.42
VIT_04s0008g01080.t01	Wine grape	nucleus	23.03	27.39
VIT_19s0014g01690.t01	Wine grape	cytosol	14.23	24.6
VIT_05s0094g00530.t01	Wine grape	cytosol	24.91	22.24

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100263362	wikigene:100263362	MapMan:35.1	EMBL:AM453420	ProteinID:CAN76669
ProteinID:CAN76669.1	ProteinID:CCB58303	ProteinID:CCB58303.1	ncoils:Coil	InterPro:DUF4005	UniProt:F6HU80
EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100263362
wikigene:LOC100263362	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295
PANTHER:PTHR32295:SF50	SMART:SM00015	SUPFAM:SSF52540	TIGR:TC67007	UniParc:UPI0002109BA8	ArrayExpress:VIT_02s0025g02690
EnsemblPlantsGene:VIT_02s0025g02690	EnsemblPlants:VIT_02s0025g02690.t01	RefSeq:XP_002272492	RefSeq:XP_002272492.1	RefSeq:XP_010660165.1	SEG:seg

Description

No Description!

Coordinates

chr2:-:2335462..2337426

Molecular Weight (calculated)

60051.0 Da

IEP (calculated)

10.823

GRAVY (calculated)

-0.781

Length

534 amino acids

Sequence
(BLAST)

001: MGKKGGSSWL TVVKRAFRSP IKDNEKKSSR RREEHELEEE EEEKKREKRR WIFRKPTTTT TTTNHVQVQE CETKMISSVP TNPILVAEQR HAIAVAAATA
101: AAAEAAVATA QAAVEIVRLT RPSSFFREHY AAVVIQTAFR GYLARTALRA LKGLVKLQAL VRGHNVRKQA KMTLKCMQAL VRVQSRVRDQ RARLSHEGSR
201: RSMFAETNSL WESRYLQEIR HRKSMSRDRS SIADECCGRP HEIEEIEAMF RSRKEGALKR EKALAYAFSH QVWRSGRNPF AGDEEDLEER TKWLQRWMAT
301: KRWESSSRAS TDKRDAIKTV EIDTSRPYSY SASNVRRSSV YQNQHLRPPT PHSTASPFHK AHHNLSLHLS PVTPSPSKTR PLQVRSASPR CLKEEESHST
401: AHTPNLASIH CFNGSMCRQG ASTNGDVASA VLPNYMAATE SAKARVRSES APRQKPSTPE RERGGGSARK RLSYPVPEAP LSSTSTTCSS MLSKSLRSPS
501: FKSVHANLSS CYTDSLGGEI SPTTTSTEQR GWLR

Best Arabidopsis Sequence Match ( AT4G00820.1 )
(BLAST)

001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR

Arabidopsis Description

iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.