Factsheet for Solyc08g083240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031576	Potato	nucleus	94.89	93.55
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	56.44	51.69
Solyc10g005000.2.1	Tomato	nucleus	41.31	51.27
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	47.44	50.33
GSMUA_Achr1P16160_001	Banana	nucleus	45.19	49.33
GSMUA_Achr1P18950_001	Banana	nucleus	45.6	48.69
AT4G10640.1	Thale cress	nucleus	39.06	45.15
Os08t0115200-01	Rice	cytosol	50.1	45.12
Bra000717.1-P	Field mustard	nucleus	39.67	44.91
CDX90766	Canola	nucleus	39.47	44.78
CDY05111	Canola	nucleus	39.26	44.76
GSMUA_Achr6P02050_001	Banana	cytosol	13.91	43.87
HORVU7Hr1G075720.1	Barley	plasma membrane	48.88	43.77
TraesCSU01G104800.3	Wheat	nucleus	48.67	43.67
TraesCS7B01G218800.3	Wheat	nucleus	48.67	43.67
TraesCS7A01G317400.2	Wheat	nucleus	48.47	43.57
EES14418	Sorghum	cytosol	50.72	43.21
Zm00001d049684_P002	Maize	cytosol, mitochondrion	48.06	43.2
Solyc01g009340.2.1	Tomato	nucleus	30.67	37.22
Solyc04g050050.2.1	Tomato	cytosol	23.52	29.19
Solyc08g062940.2.1	Tomato	cytosol	18.4	29.13
Solyc06g052010.1.1	Tomato	cytosol	21.88	26.95
Solyc10g084280.1.1	Tomato	nucleus	25.56	26.15
Solyc03g083100.2.1	Tomato	nucleus	24.74	25.8
Solyc09g007410.2.1	Tomato	cytosol	25.15	25.47
Solyc10g086060.1.1	Tomato	cytosol	23.72	24.63
Solyc11g071840.1.1	Tomato	cytosol	21.88	23.88
Solyc10g008790.2.1	Tomato	cytosol	14.11	22.7
Solyc03g121760.2.1	Tomato	cytosol	19.02	21.68
Solyc02g077260.2.1	Tomato	nucleus	12.68	20.53
Solyc12g014130.1.1	Tomato	nucleus	10.43	19.54
Solyc08g014280.2.1	Tomato	cytosol	20.86	18.92
Solyc06g053450.2.1	Tomato	nucleus	18.2	15.03

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.2	InterPro:DUF4005	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005516	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	UniProt:K4CPW8	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295
PANTHER:PTHR32295:SF50	SMART:SM00015	EnsemblPlantsGene:Solyc08g083240.2	EnsemblPlants:Solyc08g083240.2.1	UniParc:UPI000276ACEE	SEG:seg

Description

No Description!

Coordinates

chr8:-:65757263..65759544

Molecular Weight (calculated)

55610.7 Da

IEP (calculated)

10.558

GRAVY (calculated)

-0.954

Length

489 amino acids

Sequence
(BLAST)

001: MGKKKGATSW LSAVKRAFRS PTKDNSCDKK AKIEHQLDED EEKKRDKRRW LFRKQSQSEG KAMVDPKHAI APEAAVATDQ AALEIIRLTR SNKYSPSNNA
101: AVLIQTAFRG YLARRALIAL KGIVKLQALI RGQNVRKQAK MTLKCMQALL RVQARVREQR ARLSHDGGRR SMFAETTNLW DSKYLRDIRD RNSRSRDGSS
201: IADDCPRSLV ELESMLQARK EASFKREKSL AHAFTQQELD EMDIVCSEER NERELEETAN WLDEWMSSKQ WNRGSFDRRD SIKTVEMDTA KPYCNMVPNA
301: RRSQHSSPLH RQASSPHYTA NSPHHQRSSH YNYSAIQPPA TPPPCQPKPL QMRSTSPRKS QSTANTPCLR STSRSNSIMS RYSTSGNDAS VPNYMAATES
401: AKARIRSQST PKQRPSTPER ERVGAVKKRL SYPIPEPYTG YGYSQNLRSP SFKSLQAAYV GMEQQSCYTD SLGGEISPCS TTDLRRWLR

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.