Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068456 | Potato | cytosol | 96.05 | 96.05 |
| Solyc02g077260.2.1 | Tomato | nucleus | 63.82 | 64.24 |
| VIT_10s0003g00860.t01 | Wine grape | cytosol, plastid | 55.59 | 55.23 |
| Solyc12g014130.1.1 | Tomato | nucleus | 41.45 | 48.28 |
| Solyc08g062940.2.1 | Tomato | cytosol | 28.62 | 28.16 |
| Solyc04g050050.2.1 | Tomato | cytosol | 26.64 | 20.56 |
| Solyc11g071840.1.1 | Tomato | cytosol | 29.28 | 19.87 |
| Solyc09g007410.2.1 | Tomato | cytosol | 29.61 | 18.63 |
| Solyc10g086060.1.1 | Tomato | cytosol | 28.29 | 18.26 |
| Solyc10g084280.1.1 | Tomato | nucleus | 28.62 | 18.2 |
| Solyc03g121760.2.1 | Tomato | cytosol | 25.33 | 17.95 |
| Solyc10g005000.2.1 | Tomato | nucleus | 21.05 | 16.24 |
| Solyc03g083100.2.1 | Tomato | nucleus | 23.36 | 15.14 |
| Solyc08g083240.2.1 | Tomato | nucleus | 22.7 | 14.11 |
| Solyc01g009340.2.1 | Tomato | nucleus | 18.09 | 13.65 |
| Solyc06g052010.1.1 | Tomato | cytosol | 17.43 | 13.35 |
| Solyc08g014280.2.1 | Tomato | cytosol | 23.03 | 12.99 |
| Solyc06g053450.2.1 | Tomato | nucleus | 22.7 | 11.66 |
Protein Annotations
| EnsemblPlants:Solyc10g008790.2.1 | EnsemblPlantsGene:Solyc10g008790.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF9 | PFAM:PF00612 | PFscan:PS50096 |
| SEG:seg | UniParc:UPI000195C281 | UniProt:K4CY56 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr10:-:2859728..2865652
Molecular Weight (calculated)
34712.0 Da
IEP (calculated)
11.621
GRAVY (calculated)
-0.872
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGYWLKKV ISLRKAKDGR SKRLKGTSIG RKEDEHSQKE PSRRTNGASV KKHREMGIPS EDNAAIRIQT AFRAYMARKT LRRLKRISRL RSMIQGPSVK
101: KQASTTLSAL HSWNRIQAEI RACRVRMVIE GRLKQKKLEN QLKLEAKLHN LEVEWNGGPE TMEVVLSRIH QREAAAVKRE RTMAYAFSHQ WRANSNPMFG
201: SSIHDLGKAN WGWSWKDRWI AARPWESRIP VQSSPKIANR TASKTPKSYK TQTTKTPVSV KSTSANRKRA MKPRKLSYEA ADKLTALKGI NKVETSIDKQ
301: EVAS
101: KQASTTLSAL HSWNRIQAEI RACRVRMVIE GRLKQKKLEN QLKLEAKLHN LEVEWNGGPE TMEVVLSRIH QREAAAVKRE RTMAYAFSHQ WRANSNPMFG
201: SSIHDLGKAN WGWSWKDRWI AARPWESRIP VQSSPKIANR TASKTPKSYK TQTTKTPVSV KSTSANRKRA MKPRKLSYEA ADKLTALKGI NKVETSIDKQ
301: EVAS
001: MGSGNLIKAI IRLKKSKQGT EKKKTSAVKP KKGSKKKGTS LVTRSEDWAA TRIQTAFKAY KARKSLRRLK GIARAKLSTE KQSVKNQAVV TLRYLHSWSK
101: IQSEIKARRV CMVTEWRLKN KRLEHQQKLE AKLHDVEVEW NGGSETKDEI LERILQREEA TIKRERALAY AFSHQWKADG KTQWLGSYEL GNTNWGWSWK
201: ERWISARPWE VRYSVTPKKP KSSKTDSNSP AKRTVSLSSV PAKTPFPGAR NTVKPRRLSF PGA
101: IQSEIKARRV CMVTEWRLKN KRLEHQQKLE AKLHDVEVEW NGGSETKDEI LERILQREEA TIKRERALAY AFSHQWKADG KTQWLGSYEL GNTNWGWSWK
201: ERWISARPWE VRYSVTPKKP KSSKTDSNSP AKRTVSLSSV PAKTPFPGAR NTVKPRRLSF PGA
Arabidopsis Description
iqd9IQ-domain 9 [Source:UniProtKB/TrEMBL;Acc:Q0WNP8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.