Factsheet for Solyc06g053450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	95.27	91.41
Solyc08g014280.2.1	Tomato	cytosol	55.57	61.04
KRH71267	Soybean	cytosol	46.11	51.03
KRH50198	Soybean	cytosol	45.78	50.84
CDY30433	Canola	cytosol	37.33	49.11
CDY05984	Canola	nucleus	41.05	49.09
Bra007471.1-P	Field mustard	nucleus	41.05	48.99
VIT_05s0094g00530.t01	Wine grape	cytosol	49.16	48.66
CDX71881	Canola	nucleus	40.37	48.38
AT3G59690.2	Thale cress	nucleus	41.55	47.58
CDY23391	Canola	cytosol	35.81	45.99
Bra037689.1-P	Field mustard	cytosol	38.34	43.07
GSMUA_Achr7P02870_001	Banana	mitochondrion	21.11	41.53
CDX79809	Canola	nucleus	41.39	40.97
CDY66694	Canola	nucleus	41.39	40.9
GSMUA_Achr8P32220_001	Banana	cytosol	29.56	40.05
Bra004776.1-P	Field mustard	nucleus	41.72	39.52
CDX83468	Canola	plasma membrane	36.66	39.38
CDY44247	Canola	nucleus	36.49	38.85
Bra000318.1-P	Field mustard	nucleus	39.02	38.82
AT2G43680.1	Thale cress	nucleus	43.24	38.27
Os01t0896200-01	Rice	mitochondrion	18.75	32.94
EES01898	Sorghum	cytosol	29.56	31.08
Zm00001d012167_P001	Maize	cytosol	28.72	29.41
Solyc04g050050.2.1	Tomato	cytosol	19.09	28.68
Solyc09g007410.2.1	Tomato	cytosol	23.31	28.57
Solyc10g084280.1.1	Tomato	nucleus	22.47	27.82
Solyc10g086060.1.1	Tomato	cytosol	21.28	26.75
TraesCS3B01G431200.1	Wheat	cytosol	27.87	26.36
TraesCS3D01G392900.1	Wheat	cytosol	27.53	26.21
TraesCS3A01G398900.1	Wheat	cytosol	27.53	26.16
HORVU3Hr1G089690.1	Barley	cytosol	27.53	25.96
Solyc12g014130.1.1	Tomato	nucleus	11.32	25.67
Solyc03g083100.2.1	Tomato	nucleus	18.24	23.03
Solyc10g005000.2.1	Tomato	nucleus	15.2	22.84
Solyc10g008790.2.1	Tomato	cytosol	11.66	22.7
Solyc08g062940.2.1	Tomato	cytosol	11.15	21.36
Solyc02g077260.2.1	Tomato	nucleus	10.64	20.86
Solyc06g052010.1.1	Tomato	cytosol	13.51	20.15
Solyc11g071840.1.1	Tomato	cytosol	14.53	19.2
Solyc08g083240.2.1	Tomato	nucleus	15.03	18.2
Solyc03g121760.2.1	Tomato	cytosol	12.84	17.72
Solyc01g009340.2.1	Tomato	nucleus	10.3	15.14

Protein Annotations

EnsemblPlants:Solyc06g053450.2.1	EnsemblPlantsGene:Solyc06g053450.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18	PFAM:PF00612	PFscan:PS50096	SEG:seg
SMART:SM00015	UniParc:UPI00027674A8	UniProt:K4C632	MapMan:20.6.2	:	:

Description

No Description!

Coordinates

chr6:+:36254859..36261451

Molecular Weight (calculated)

65796.6 Da

IEP (calculated)

11.188

GRAVY (calculated)

-0.857

Length

592 amino acids

Sequence
(BLAST)

001: MGEKGSWFYA LKRVFTCNSK KKSAYGSGKK TAKEKKKGRR ILRHGEFKSF LFREPSSIEK ILGEVDDQNL LVRPPTSEQS GIPSAFPVAP TSPRINSPRD
101: ASPQSSYRAT SPGVTSPRVA SPRVVSPKAA SPKVTSPKEA SPKVTSPREA YPKATSASAP SLKALSPREA SPKANSASAP SQKATAPKEA SPRVSSPRST
201: YPEPSRNHNE ISYANRPEAT LTLHLSATKI QAAYRSYMAR RGFKSLSGLA RLQGVVRSRS VKRQTVNAMK QMQLLGRVQM QIQSRRSQMF QALHSQAYMN
301: DKEVESTLSK WTQLTEAGNH DDWNNSMLTK DEVEARRREK VEAVIKRERA MSYAYSHQLW RRNPKSATDI RTSGIPWWWN WLHHQLLPGN DSESQSAVKD
401: VHSTPSRAIS EHKPSPWRLS QNFRHLHLDY DSHESVTPRS TKSAVPLRGK LMHTPRRTSS PMSSSSVSKY SRRRASAADS PFNHSMKDDD SLTSCPPFSG
501: PSYMSPTISA KAKFRGKTIL EERNIGTPSN SSRRRLSFPL TPSSTGSVKW NKGSGKDAAS LKEHESMGDH MSVHSTGSTP TIVGRKPFQR FV

Best Arabidopsis Sequence Match ( AT2G43680.1 )
(BLAST)

001: MVKKGSWFSA IKRVFTPHSK EKLANQEPER KSGKEKKKKG FGKLRHGETN SFLPIFREPS SIEKILGEAE RDHNLVFRPP TPDRPNPYSA SPPPRPASPR
101: VASPRPTSPR VASPRVPSPR AEVPRTLSPK PPSPRAEVPR SLSPKPPSPR ADLPRSLSPK PFDRSKPSSA SANAPPTLRP ASTRVPSQRI TPHSVPSPRP
201: SSPRGASPQA ISSKPPSPRA EPPTLDTPRP PSPRAASLRA DPPRLDAARP TTPRPPSPLA DAPRLDAPRP TTPKPPSPRS DPPRLDAPRP TTPKPPSPRS
301: VSPRAVQRRE IVYRPEPTLP VQHASATKIQ GAFRGYMARK SFRALKGLVR LQGVVRGYSV KRQTINAMKY MQQVVRVQSQ IQSRRIKMLE NQAQVEKDEA
401: KWAASEAGND NWDDSVLTKE ERDSRSQRKT DAIIKRERSM AYAYSRKLWK NSPKSTQDNR SFPQWWNWVD RQNPLASPAP SYSQPQRDFR LTPSRLCPSP
501: LSQSSKQHHI RLDNHFDTST PRSSRSTFHT PSRPIHTGTS RYSRGRLRGQ DSPFKDDDSL TSCPPFPSYM APTVSAKAKV RPNSNPKERV MGTPVSEKRR
601: MSYPPTQDTF RWNKGSLVMS NSSSHRGPGS PGGVVLEKHK TLKSVGNLSI GSTASMATTV GRKEFNRFV

Arabidopsis Description

IQD14IQD14 [Source:UniProtKB/TrEMBL;Acc:A0A178VRE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.