Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX79809 Canola nucleus 93.16 93.31
CDY30433 Canola cytosol 58.1 77.33
CDY23391 Canola cytosol 57.43 74.62
CDY44247 Canola nucleus 66.61 71.76
CDX83468 Canola plasma membrane 64.77 70.42
AT2G43680.1 Thale cress nucleus 77.96 69.81
CDY05984 Canola nucleus 54.92 66.46
CDX71881 Canola nucleus 54.09 65.59
KRH50198 Soybean cytosol 46.74 52.53
KRH71267 Soybean cytosol 45.41 50.84
Solyc08g014280.2.1 Tomato cytosol 42.07 46.75
PGSC0003DMT400041427 Potato cytosol 41.4 46.36
VIT_05s0094g00530.t01 Wine grape cytosol 46.08 46.15
Solyc06g053450.2.1 Tomato nucleus 40.9 41.39
PGSC0003DMT400042121 Potato cytosol, mitochondrion 41.57 40.36
GSMUA_Achr7P02870_001 Banana mitochondrion 18.7 37.21
GSMUA_Achr8P32220_001 Banana cytosol 26.71 36.61
Os01t0896200-01 Rice mitochondrion 18.53 32.94
EES01898 Sorghum cytosol 29.88 31.79
Zm00001d012167_P001 Maize cytosol 29.55 30.62
CDY11238 Canola cytosol, plastid 20.7 30.02
CDX80849 Canola cytosol, plastid 20.87 29.34
HORVU3Hr1G089690.1 Barley cytosol 29.22 27.87
CDY04876 Canola nucleus, plastid 20.7 27.87
TraesCS3D01G392900.1 Wheat cytosol 28.88 27.81
TraesCS3A01G398900.1 Wheat cytosol 28.88 27.77
CDY55696 Canola nucleus, plastid 20.2 27.69
TraesCS3B01G431200.1 Wheat cytosol 28.88 27.64
CDY10410 Canola cytosol, plastid 20.37 27.48
CDY17214 Canola cytosol, plastid 12.02 27.17
CDY27925 Canola plastid 11.85 26.79
CDX70333 Canola cytosol 20.37 25.42
CDX95328 Canola cytosol 18.53 24.94
CDY23202 Canola cytosol 18.53 24.94
CDY62768 Canola cytosol 11.52 24.91
CDY32322 Canola cytosol, plastid 10.35 23.94
CDX96427 Canola cytosol 9.68 23.87
CDY08131 Canola nucleus 13.52 23.55
CDY20099 Canola cytosol 10.35 23.48
CDY05931 Canola nucleus 13.69 23.3
CDY38525 Canola cytosol 15.86 23.0
CDX72935 Canola cytosol 9.85 22.43
CDX92933 Canola cytosol, plastid 14.86 22.19
CDY24286 Canola cytosol 14.86 22.03
CDY05111 Canola nucleus 15.69 21.91
CDX90766 Canola nucleus 15.69 21.81
CDY10618 Canola cytosol 14.69 21.67
CDY15200 Canola nucleus 18.2 21.33
CDX90011 Canola nucleus 18.03 21.26
CDX77034 Canola cytosol 13.86 20.96
CDY35313 Canola nucleus 13.86 20.91
CDX91859 Canola mitochondrion, nucleus 18.36 20.75
CDX83237 Canola cytosol 17.53 20.71
CDY37387 Canola cytosol 13.19 20.57
CDY48305 Canola nucleus 12.85 20.53
CDY26241 Canola nucleus 12.85 20.53
CDY39505 Canola cytosol 13.52 20.51
CDX86983 Canola nucleus 16.03 20.21
CDY69140 Canola mitochondrion, nucleus 17.7 20.19
CDY00196 Canola nucleus 15.69 19.79
CDY05917 Canola mitochondrion, nucleus 15.53 19.58
CDY08120 Canola mitochondrion, nucleus 15.03 18.99
CDY58749 Canola cytosol 13.86 18.2
CDX96426 Canola nucleus, plastid 3.01 17.65
CDX72934 Canola nucleus, plastid 3.01 17.65
CDX73992 Canola nucleus 13.86 17.4
CDY41307 Canola cytosol 15.86 17.37
CDY22198 Canola cytosol 16.19 17.35
CDY07937 Canola nucleus 13.36 16.74
CDY05918 Canola mitochondrion 8.18 15.61
CDX92931 Canola mitochondrion, nucleus 6.51 15.29
CDY24282 Canola mitochondrion 6.68 13.11
Protein Annotations
EnsemblPlants:CDY66694EnsemblPlantsGene:GSBRNA2T00055583001GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:DUF4005
InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSncoils:CoilPANTHER:PTHR32295PANTHER:PTHR32295:SF18PFAM:PF00612
PFAM:PF13178PFscan:PS50096ProteinID:CDY66694ProteinID:CDY66694.1SEG:segSMART:SM00015
UniParc:UPI0004EC8638UniProt:A0A078JIZ4MapMan:20.6.2:::
Description
BnaC04g53080DBnaC04g53080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIZ4]
Coordinates
chrLK035410:-:11418..15000
Molecular Weight (calculated)
66240.7 Da
IEP (calculated)
11.855
GRAVY (calculated)
-0.963
Length
599 amino acids
Sequence
(BLAST)
001: MGKKGSWFSA IKRVFTPHSK EKLGNEGERK NVKEKRKKGF GKLRRGEPSS IEKIFGEAER DHNLFFRPST PPPDPDRSNP PSYSPPPPLR PASPQLPSPK
101: PHPPPRADLP RLDPPRPPDL SASSSASASA PPPPLKPAST RVPSQRINPP IVPSPRPTSP RVVSQQAVPQ KLPSPRADSL RLNNPRPSSP KPPSPRADSP
201: RLNTPRPPSP GAEPPTLDAP RPITPRPPSP RPVSPRPVQR REIVPRPEPT LLVQHASATK IQAAFRAYMA RRSFRALKGL VRLQGVVRGH SVKRQTINAM
301: KYMQQLVRVQ SQIQSRRIKT LENKAQAERD EAKWAAASDA GNGNWDDSVL TKEERDARSQ RKTDAVIKRE RSMAYAYSHK LWKNSPKSAA STGGLPLWWN
401: WMDWQLPLAS PAPSYRDYRL TPTRLSPSPL SHHFRHDSNF DTSTPKSSRS TLLTPSRPIR TGTSRYSRGR GQDSPFTDND SLTSCPPFPS YMAPTVSARA
501: KVRPSSNPKE RVMGTPSSVS SERRRMSYPP TQQGMDTFRW NKGSLVMSNS SGQRGGGGPS SPGGVVLEKH KTLKSVGNLS IGSSTVSMAD GRKRFNRYV
Best Arabidopsis Sequence Match ( AT2G43680.5 )
(BLAST)
001: MVKKGSWFSA IKRVFTPHSK EKLANEPERK SGKEKKKKGF GKLRHGETNS FLPIFREPSS IEKILGEAER DHNLVFRPPT PDRPNPYSAS PPPRPASPRV
101: ASPRPTSPRV ASPRVPSPRA EVPRTLSPKP PSPRAEVPRS LSPKPPSPRA DLPRSLSPKP FDRSKPSSAS ANAPPTLRPA STRVPSQRIT PHSVPSPRPS
201: SPRGASPQAI SSKPPSPRAE PPTLDTPRPP SPRAASLRAD PPRLDAARPT TPRPPSPLAD APRLDAPRPT TPKPPSPRSD PPRLDAPRPT TPKPPSPRSV
301: SPRAVQRREI VYRPEPTLPV QHASATKIQG AFRGYMARKS FRALKGLVRL QGVVRGYSVK RQTINAMKYM QQVVRVQSQI QSRRIKMLEN QAQVEKDEAK
401: WAASEAGNDN WDDSVLTKEE RDSRSQRKTD AIIKRERSMA YAYSRKLWKN SPKSTQDNRS FPQWWNWVDR QNPLASPAPS YSQPQRDFRL TPSRLCPSPL
501: SQSSKQHHIR LDNHFDTSTP RSSRSTFHTP SRPIHTGTSR YSRGRLRGQD SPFKDDDSLT SCPPFPSYMA PTVSAKAKVR PNSNPKERVM GTPVSEKRRM
601: SYPPTQDTFR WNKGSLVMSN SSSHRGPGSP GGVVLEKHKT LKSVGNLSIG STASMATTVG RKEFNRFV
Arabidopsis Description
IQD14IQD14 [Source:UniProtKB/TrEMBL;Acc:A0A178VRE6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.